Hb_005333_100

Information

Type -
Description -
Location Contig5333: 91239-92543
Sequence    

Annotation

kegg
ID rcu:RCOM_1039180
description hypothetical protein
nr
ID XP_002514025.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RJV6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1039180 PE=4 SV=1
Gene Ontology
ID GO:0009860
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005333_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000120_980 0.0765158717 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 5-like [Jatropha curcas]
3 Hb_000684_010 0.0807026316 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
4 Hb_000976_060 0.0874245007 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
5 Hb_001838_010 0.1003297777 - - hypothetical protein POPTR_0005s18380g [Populus trichocarpa]
6 Hb_000255_020 0.1022244944 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
7 Hb_000489_020 0.1030305577 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
8 Hb_000876_050 0.1043896669 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like [Jatropha curcas]
9 Hb_152718_010 0.1055423867 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
10 Hb_005542_110 0.1056146435 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01203 [Jatropha curcas]
11 Hb_000221_170 0.1076684383 - - PREDICTED: alcohol dehydrogenase-like 2 [Jatropha curcas]
12 Hb_005489_160 0.114685635 - - PREDICTED: primary amine oxidase-like [Jatropha curcas]
13 Hb_004055_100 0.1167428076 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
14 Hb_001623_470 0.1173501794 - - ammonium transporter, putative [Ricinus communis]
15 Hb_002475_100 0.1302091553 - - PREDICTED: uncharacterized protein LOC105645451 [Jatropha curcas]
16 Hb_001769_030 0.1338939538 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
17 Hb_001454_160 0.1363579206 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
18 Hb_012753_200 0.139211822 - - hypothetical protein JCGZ_20651 [Jatropha curcas]
19 Hb_001355_110 0.1403717688 - - PREDICTED: mitochondrial chaperone BCS1-like isoform X1 [Jatropha curcas]
20 Hb_012395_070 0.1418435889 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]

Gene co-expression network

sample Hb_005333_100 Hb_005333_100 Hb_000120_980 Hb_000120_980 Hb_005333_100--Hb_000120_980 Hb_000684_010 Hb_000684_010 Hb_005333_100--Hb_000684_010 Hb_000976_060 Hb_000976_060 Hb_005333_100--Hb_000976_060 Hb_001838_010 Hb_001838_010 Hb_005333_100--Hb_001838_010 Hb_000255_020 Hb_000255_020 Hb_005333_100--Hb_000255_020 Hb_000489_020 Hb_000489_020 Hb_005333_100--Hb_000489_020 Hb_000120_980--Hb_000684_010 Hb_000876_050 Hb_000876_050 Hb_000120_980--Hb_000876_050 Hb_005542_110 Hb_005542_110 Hb_000120_980--Hb_005542_110 Hb_000086_370 Hb_000086_370 Hb_000120_980--Hb_000086_370 Hb_002475_100 Hb_002475_100 Hb_000120_980--Hb_002475_100 Hb_000684_010--Hb_000876_050 Hb_000684_010--Hb_005542_110 Hb_001675_130 Hb_001675_130 Hb_000684_010--Hb_001675_130 Hb_007709_010 Hb_007709_010 Hb_000684_010--Hb_007709_010 Hb_152718_010 Hb_152718_010 Hb_000976_060--Hb_152718_010 Hb_001454_160 Hb_001454_160 Hb_000976_060--Hb_001454_160 Hb_000976_060--Hb_005542_110 Hb_000976_060--Hb_001838_010 Hb_001623_470 Hb_001623_470 Hb_000976_060--Hb_001623_470 Hb_001838_010--Hb_000255_020 Hb_106969_010 Hb_106969_010 Hb_001838_010--Hb_106969_010 Hb_002007_140 Hb_002007_140 Hb_001838_010--Hb_002007_140 Hb_000265_010 Hb_000265_010 Hb_001838_010--Hb_000265_010 Hb_000856_240 Hb_000856_240 Hb_000255_020--Hb_000856_240 Hb_003439_020 Hb_003439_020 Hb_000255_020--Hb_003439_020 Hb_134017_010 Hb_134017_010 Hb_000255_020--Hb_134017_010 Hb_074312_020 Hb_074312_020 Hb_000255_020--Hb_074312_020 Hb_009581_040 Hb_009581_040 Hb_000255_020--Hb_009581_040 Hb_000265_020 Hb_000265_020 Hb_000489_020--Hb_000265_020 Hb_001355_110 Hb_001355_110 Hb_000489_020--Hb_001355_110 Hb_000489_020--Hb_001623_470 Hb_000489_020--Hb_152718_010 Hb_001769_030 Hb_001769_030 Hb_000489_020--Hb_001769_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.2431 0.110007 0.181184 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.01695 0.240225

CAGE analysis