Hb_005333_130

Information

Type -
Description -
Location Contig5333: 104404-107718
Sequence    

Annotation

kegg
ID rcu:RCOM_1039200
description hypothetical protein
nr
ID XP_002514027.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8LGG8
description Universal stress protein A-like protein OS=Arabidopsis thaliana GN=At3g01520 PE=1 SV=2
trembl
ID B9RJV8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1039200 PE=4 SV=1
Gene Ontology
ID GO:0006811
description universal stress protein a-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47474: 104505-107656 , PASA_asmbl_47475: 104681-107884 , PASA_asmbl_47476: 105622-105745
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005333_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_008453_090 0.0710775309 - - hypothetical protein JCGZ_08177 [Jatropha curcas]
3 Hb_003018_200 0.0791230208 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
4 Hb_000634_100 0.0836704377 - - hypothetical protein PRUPE_ppa013350mg [Prunus persica]
5 Hb_004951_040 0.0843652778 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31790-like [Jatropha curcas]
6 Hb_023386_080 0.0959667148 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
7 Hb_003216_100 0.0962091043 - - PREDICTED: uncharacterized protein LOC105641496 [Jatropha curcas]
8 Hb_000350_090 0.0970677729 transcription factor TF Family: GeBP transcription regulator, putative [Ricinus communis]
9 Hb_007943_090 0.0983243189 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
10 Hb_008289_060 0.0983779213 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
11 Hb_003408_030 0.0989997599 - - PREDICTED: protein YIF1B [Jatropha curcas]
12 Hb_004108_050 0.0992721579 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
13 Hb_016065_010 0.099609727 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
14 Hb_000377_060 0.1011914723 - - ARF GTPase activator, putative [Ricinus communis]
15 Hb_007672_010 0.1017552714 - - PREDICTED: uncharacterized protein LOC105639669 isoform X1 [Jatropha curcas]
16 Hb_005694_080 0.1019041668 - - DNA-directed RNA polymerase III, putative [Ricinus communis]
17 Hb_007101_130 0.1024419395 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000376_050 0.1036508733 - - polyadenylate-binding protein, putative [Ricinus communis]
19 Hb_001863_390 0.1043885257 - - PREDICTED: monoacylglycerol lipase ABHD6 [Jatropha curcas]
20 Hb_007101_150 0.1046539232 - - hypothetical protein CICLE_v10033984mg [Citrus clementina]

Gene co-expression network

sample Hb_005333_130 Hb_005333_130 Hb_008453_090 Hb_008453_090 Hb_005333_130--Hb_008453_090 Hb_003018_200 Hb_003018_200 Hb_005333_130--Hb_003018_200 Hb_000634_100 Hb_000634_100 Hb_005333_130--Hb_000634_100 Hb_004951_040 Hb_004951_040 Hb_005333_130--Hb_004951_040 Hb_023386_080 Hb_023386_080 Hb_005333_130--Hb_023386_080 Hb_003216_100 Hb_003216_100 Hb_005333_130--Hb_003216_100 Hb_008453_090--Hb_004951_040 Hb_016065_010 Hb_016065_010 Hb_008453_090--Hb_016065_010 Hb_000193_290 Hb_000193_290 Hb_008453_090--Hb_000193_290 Hb_055062_030 Hb_055062_030 Hb_008453_090--Hb_055062_030 Hb_008453_090--Hb_003018_200 Hb_001863_390 Hb_001863_390 Hb_003018_200--Hb_001863_390 Hb_002603_100 Hb_002603_100 Hb_003018_200--Hb_002603_100 Hb_007101_150 Hb_007101_150 Hb_003018_200--Hb_007101_150 Hb_000056_340 Hb_000056_340 Hb_003018_200--Hb_000056_340 Hb_007101_130 Hb_007101_130 Hb_003018_200--Hb_007101_130 Hb_003376_120 Hb_003376_120 Hb_000634_100--Hb_003376_120 Hb_000634_100--Hb_023386_080 Hb_000329_040 Hb_000329_040 Hb_000634_100--Hb_000329_040 Hb_003408_030 Hb_003408_030 Hb_000634_100--Hb_003408_030 Hb_044662_070 Hb_044662_070 Hb_000634_100--Hb_044662_070 Hb_008289_060 Hb_008289_060 Hb_004951_040--Hb_008289_060 Hb_004951_040--Hb_055062_030 Hb_004951_040--Hb_003018_200 Hb_000223_150 Hb_000223_150 Hb_004951_040--Hb_000223_150 Hb_023386_080--Hb_002603_100 Hb_023386_080--Hb_000329_040 Hb_023386_080--Hb_044662_070 Hb_000956_010 Hb_000956_010 Hb_023386_080--Hb_000956_010 Hb_000376_050 Hb_000376_050 Hb_023386_080--Hb_000376_050 Hb_000883_050 Hb_000883_050 Hb_003216_100--Hb_000883_050 Hb_001248_080 Hb_001248_080 Hb_003216_100--Hb_001248_080 Hb_000923_070 Hb_000923_070 Hb_003216_100--Hb_000923_070 Hb_000531_020 Hb_000531_020 Hb_003216_100--Hb_000531_020 Hb_003216_100--Hb_007101_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.9365 23.3227 13.5685 15.9247 62.7718 44.0836
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.5203 103.478 106.969 21.7393 7.586

CAGE analysis