Hb_005333_140

Information

Type -
Description -
Location Contig5333: 135688-143590
Sequence    

Annotation

kegg
ID rcu:RCOM_1039210
description hypothetical protein
nr
ID XP_012067984.1
description PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
swissprot
ID Q9SB51
description Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana GN=UBP16 PE=1 SV=1
trembl
ID A0A067LBH4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15876 PE=4 SV=1
Gene Ontology
ID GO:0036459
description ubiquitin carboxyl-terminal hydrolase 16 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47478: 135713-143587
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005333_140 0.0 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
2 Hb_002461_020 0.0455158327 - - PREDICTED: uncharacterized protein LOC105642649 isoform X2 [Jatropha curcas]
3 Hb_000529_060 0.0538103866 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 17 isoform X1 [Jatropha curcas]
4 Hb_000996_020 0.0542240224 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
5 Hb_023344_140 0.0603801822 - - PREDICTED: WD repeat-containing protein 70 [Jatropha curcas]
6 Hb_000046_600 0.0606584489 - - PREDICTED: cullin-1-like [Jatropha curcas]
7 Hb_000189_630 0.0623822864 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
8 Hb_008054_040 0.0641783319 - - PREDICTED: cullin-4 [Jatropha curcas]
9 Hb_005403_010 0.0652401148 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
10 Hb_000260_760 0.0657176206 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
11 Hb_000030_140 0.0676727431 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
12 Hb_170077_010 0.0682916838 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
13 Hb_011972_020 0.0692527665 - - protein binding protein, putative [Ricinus communis]
14 Hb_000445_060 0.0694036475 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
15 Hb_000102_050 0.0706505205 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
16 Hb_000661_120 0.072902294 - - cap binding protein, putative [Ricinus communis]
17 Hb_033642_120 0.0739956636 - - PREDICTED: nucleolar GTP-binding protein 2 [Vitis vinifera]
18 Hb_009178_010 0.0745339384 - - PREDICTED: uncharacterized protein LOC105637474 [Jatropha curcas]
19 Hb_001221_090 0.0760164631 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
20 Hb_000110_350 0.076740342 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]

Gene co-expression network

sample Hb_005333_140 Hb_005333_140 Hb_002461_020 Hb_002461_020 Hb_005333_140--Hb_002461_020 Hb_000529_060 Hb_000529_060 Hb_005333_140--Hb_000529_060 Hb_000996_020 Hb_000996_020 Hb_005333_140--Hb_000996_020 Hb_023344_140 Hb_023344_140 Hb_005333_140--Hb_023344_140 Hb_000046_600 Hb_000046_600 Hb_005333_140--Hb_000046_600 Hb_000189_630 Hb_000189_630 Hb_005333_140--Hb_000189_630 Hb_002461_020--Hb_000996_020 Hb_000030_140 Hb_000030_140 Hb_002461_020--Hb_000030_140 Hb_000260_760 Hb_000260_760 Hb_002461_020--Hb_000260_760 Hb_001221_090 Hb_001221_090 Hb_002461_020--Hb_001221_090 Hb_170077_010 Hb_170077_010 Hb_002461_020--Hb_170077_010 Hb_000977_300 Hb_000977_300 Hb_000529_060--Hb_000977_300 Hb_000529_060--Hb_000996_020 Hb_000529_060--Hb_000046_600 Hb_011972_020 Hb_011972_020 Hb_000529_060--Hb_011972_020 Hb_001171_030 Hb_001171_030 Hb_000529_060--Hb_001171_030 Hb_000445_060 Hb_000445_060 Hb_000996_020--Hb_000445_060 Hb_000373_170 Hb_000373_170 Hb_000996_020--Hb_000373_170 Hb_000661_120 Hb_000661_120 Hb_000996_020--Hb_000661_120 Hb_023344_140--Hb_170077_010 Hb_023344_140--Hb_000046_600 Hb_005403_010 Hb_005403_010 Hb_023344_140--Hb_005403_010 Hb_000358_220 Hb_000358_220 Hb_023344_140--Hb_000358_220 Hb_023344_140--Hb_000996_020 Hb_000046_600--Hb_005403_010 Hb_000994_020 Hb_000994_020 Hb_000046_600--Hb_000994_020 Hb_000046_600--Hb_000977_300 Hb_003142_040 Hb_003142_040 Hb_000189_630--Hb_003142_040 Hb_000189_630--Hb_001171_030 Hb_000189_630--Hb_000977_300 Hb_004517_020 Hb_004517_020 Hb_000189_630--Hb_004517_020 Hb_005834_040 Hb_005834_040 Hb_000189_630--Hb_005834_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9614 22.6813 24.5416 15.4902 15.5402 10.2154
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.40567 6.51359 7.45766 16.3132 17.7783

CAGE analysis