Hb_005333_160

Information

Type -
Description -
Location Contig5333: 170799-174764
Sequence    

Annotation

kegg
ID mdm:103410470
description AP-4 complex subunit mu-like
nr
ID KJB58887.1
description hypothetical protein B456_009G230200 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2QLI9
description Gossypium raimondii chromosome 9, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_009G230200 PE=4 SV=1
Gene Ontology
ID GO:0005829
description ap-4 complex subunit mu

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47481: 171581-173420 , PASA_asmbl_47482: 171766-172783 , PASA_asmbl_47484: 173930-174050 , PASA_asmbl_47485: 174505-189867
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005333_160 0.0 - - hypothetical protein B456_009G230200 [Gossypium raimondii]
2 Hb_171900_070 0.066251096 - - -
3 Hb_003943_020 0.0675597704 - - PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1 isoform X1 [Jatropha curcas]
4 Hb_000086_560 0.0688512993 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
5 Hb_000359_120 0.0768789679 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000523_080 0.0801270076 - - PREDICTED: LOW QUALITY PROTEIN: beta-catenin-like protein 1 [Jatropha curcas]
7 Hb_011689_060 0.0854344728 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
8 Hb_005289_040 0.0878592935 - - poly(A) polymerase, putative [Ricinus communis]
9 Hb_000318_120 0.0880655108 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: DNA ligase 1 isoform X2 [Jatropha curcas]
10 Hb_002157_050 0.0882361298 - - hypothetical protein JCGZ_16907 [Jatropha curcas]
11 Hb_000406_230 0.0888396015 - - PREDICTED: probable nucleolar protein 5-1 [Jatropha curcas]
12 Hb_001307_080 0.0892808104 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
13 Hb_003739_030 0.08959613 - - PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Jatropha curcas]
14 Hb_023344_010 0.0901157195 - - PREDICTED: pre-mRNA-processing factor 39 isoform X2 [Jatropha curcas]
15 Hb_004096_190 0.092081445 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
16 Hb_004096_070 0.0933434734 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Jatropha curcas]
17 Hb_002890_120 0.0936454364 - - Nucleic acid binding,RNA binding isoform 1 [Theobroma cacao]
18 Hb_000010_360 0.0946686546 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
19 Hb_128548_010 0.0948703067 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006658_040 0.0951080841 - - hypothetical protein POPTR_0006s19640g [Populus trichocarpa]

Gene co-expression network

sample Hb_005333_160 Hb_005333_160 Hb_171900_070 Hb_171900_070 Hb_005333_160--Hb_171900_070 Hb_003943_020 Hb_003943_020 Hb_005333_160--Hb_003943_020 Hb_000086_560 Hb_000086_560 Hb_005333_160--Hb_000086_560 Hb_000359_120 Hb_000359_120 Hb_005333_160--Hb_000359_120 Hb_000523_080 Hb_000523_080 Hb_005333_160--Hb_000523_080 Hb_011689_060 Hb_011689_060 Hb_005333_160--Hb_011689_060 Hb_171900_070--Hb_000359_120 Hb_005289_040 Hb_005289_040 Hb_171900_070--Hb_005289_040 Hb_171900_070--Hb_000086_560 Hb_032202_120 Hb_032202_120 Hb_171900_070--Hb_032202_120 Hb_171900_070--Hb_011689_060 Hb_003943_020--Hb_000523_080 Hb_000318_120 Hb_000318_120 Hb_003943_020--Hb_000318_120 Hb_128548_010 Hb_128548_010 Hb_003943_020--Hb_128548_010 Hb_013358_070 Hb_013358_070 Hb_003943_020--Hb_013358_070 Hb_001723_140 Hb_001723_140 Hb_003943_020--Hb_001723_140 Hb_011930_080 Hb_011930_080 Hb_000086_560--Hb_011930_080 Hb_001427_190 Hb_001427_190 Hb_000086_560--Hb_001427_190 Hb_005053_010 Hb_005053_010 Hb_000086_560--Hb_005053_010 Hb_002374_260 Hb_002374_260 Hb_000086_560--Hb_002374_260 Hb_000270_460 Hb_000270_460 Hb_000359_120--Hb_000270_460 Hb_001953_150 Hb_001953_150 Hb_000359_120--Hb_001953_150 Hb_006658_040 Hb_006658_040 Hb_000359_120--Hb_006658_040 Hb_000359_120--Hb_000086_560 Hb_000523_080--Hb_128548_010 Hb_007929_080 Hb_007929_080 Hb_000523_080--Hb_007929_080 Hb_009771_110 Hb_009771_110 Hb_000523_080--Hb_009771_110 Hb_000523_080--Hb_001723_140 Hb_000523_080--Hb_013358_070 Hb_000505_020 Hb_000505_020 Hb_011689_060--Hb_000505_020 Hb_001235_140 Hb_001235_140 Hb_011689_060--Hb_001235_140 Hb_002078_100 Hb_002078_100 Hb_011689_060--Hb_002078_100 Hb_004096_070 Hb_004096_070 Hb_011689_060--Hb_004096_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.93077 6.96472 7.65879 4.0492 8.55414 7.19514
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.59752 3.04437 1.56566 9.05352 4.98156

CAGE analysis