Hb_005337_100

Information

Type -
Description -
Location Contig5337: 175003-175499
Sequence    

Annotation

kegg
ID rcu:RCOM_0737540
description hypothetical protein
nr
ID XP_012066316.1
description PREDICTED: uncharacterized protein LOC105629349 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L6S1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23880 PE=4 SV=1
Gene Ontology
ID GO:0010207
description duf3148 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47493: 175013-175699
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005337_100 0.0 - - PREDICTED: uncharacterized protein LOC105629349 [Jatropha curcas]
2 Hb_000520_040 0.0624107043 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
3 Hb_008536_020 0.0732226036 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
4 Hb_000500_240 0.0778670948 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000329_780 0.0787956731 - - hypothetical protein POPTR_0403s00200g [Populus trichocarpa]
6 Hb_084303_010 0.0788940237 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004635_120 0.0792919167 - - PREDICTED: rho GTPase-activating protein 4-like [Jatropha curcas]
8 Hb_006831_090 0.0795762395 - - PREDICTED: uncharacterized protein LOC105642125 isoform X1 [Jatropha curcas]
9 Hb_060253_010 0.0797623274 - - hypothetical protein JCGZ_14707 [Jatropha curcas]
10 Hb_000599_150 0.0810913012 - - PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]
11 Hb_004032_280 0.0840865989 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
12 Hb_001158_130 0.0846178928 - - PREDICTED: protein TAPETUM DETERMINANT 1-like [Jatropha curcas]
13 Hb_000046_120 0.0853955977 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
14 Hb_002066_110 0.087895692 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
15 Hb_002572_040 0.0881510797 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
16 Hb_001942_010 0.0895105202 - - hypothetical protein JCGZ_20930 [Jatropha curcas]
17 Hb_002702_010 0.0915032906 - - carbohydrate binding protein, putative [Ricinus communis]
18 Hb_002600_170 0.0916573365 - - conserved hypothetical protein [Ricinus communis]
19 Hb_032920_020 0.0930718087 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
20 Hb_005694_160 0.0937192178 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005337_100 Hb_005337_100 Hb_000520_040 Hb_000520_040 Hb_005337_100--Hb_000520_040 Hb_008536_020 Hb_008536_020 Hb_005337_100--Hb_008536_020 Hb_000500_240 Hb_000500_240 Hb_005337_100--Hb_000500_240 Hb_000329_780 Hb_000329_780 Hb_005337_100--Hb_000329_780 Hb_084303_010 Hb_084303_010 Hb_005337_100--Hb_084303_010 Hb_004635_120 Hb_004635_120 Hb_005337_100--Hb_004635_120 Hb_000520_040--Hb_000500_240 Hb_001047_210 Hb_001047_210 Hb_000520_040--Hb_001047_210 Hb_000329_440 Hb_000329_440 Hb_000520_040--Hb_000329_440 Hb_000520_040--Hb_008536_020 Hb_060253_010 Hb_060253_010 Hb_000520_040--Hb_060253_010 Hb_002600_170 Hb_002600_170 Hb_008536_020--Hb_002600_170 Hb_006831_090 Hb_006831_090 Hb_008536_020--Hb_006831_090 Hb_008536_020--Hb_000329_780 Hb_004032_280 Hb_004032_280 Hb_008536_020--Hb_004032_280 Hb_002374_180 Hb_002374_180 Hb_008536_020--Hb_002374_180 Hb_005694_160 Hb_005694_160 Hb_000500_240--Hb_005694_160 Hb_000500_240--Hb_000329_440 Hb_102179_010 Hb_102179_010 Hb_000500_240--Hb_102179_010 Hb_000500_240--Hb_001047_210 Hb_000500_240--Hb_000329_780 Hb_000329_780--Hb_006831_090 Hb_000329_780--Hb_002600_170 Hb_002119_100 Hb_002119_100 Hb_000329_780--Hb_002119_100 Hb_000329_780--Hb_002374_180 Hb_000031_180 Hb_000031_180 Hb_000329_780--Hb_000031_180 Hb_001942_010 Hb_001942_010 Hb_084303_010--Hb_001942_010 Hb_005725_240 Hb_005725_240 Hb_084303_010--Hb_005725_240 Hb_001638_200 Hb_001638_200 Hb_084303_010--Hb_001638_200 Hb_000156_110 Hb_000156_110 Hb_084303_010--Hb_000156_110 Hb_084303_010--Hb_060253_010 Hb_004635_120--Hb_001638_200 Hb_012395_240 Hb_012395_240 Hb_004635_120--Hb_012395_240 Hb_004635_120--Hb_000156_110 Hb_000538_090 Hb_000538_090 Hb_004635_120--Hb_000538_090 Hb_000000_390 Hb_000000_390 Hb_004635_120--Hb_000000_390 Hb_032920_020 Hb_032920_020 Hb_004635_120--Hb_032920_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.171341 4.20075 35.3945 35.3907 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.4389 44.1662

CAGE analysis