Hb_005337_140

Information

Type -
Description -
Location Contig5337: 218613-233676
Sequence    

Annotation

kegg
ID rcu:RCOM_0737170
description kinase, putative
nr
ID XP_012066397.1
description PREDICTED: LOW QUALITY PROTEIN: wall-associated receptor kinase 1-like [Jatropha curcas]
swissprot
ID Q9LMP1
description Wall-associated receptor kinase 2 OS=Arabidopsis thaliana GN=WAK2 PE=1 SV=1
trembl
ID A0A067L6R8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23875 PE=4 SV=1
Gene Ontology
ID GO:0003676
description wall-associated receptor kinase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47494: 229346-229813
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005337_140 0.0 - - PREDICTED: LOW QUALITY PROTEIN: wall-associated receptor kinase 1-like [Jatropha curcas]
2 Hb_002307_120 0.0903462501 - - scab resistance family protein [Populus trichocarpa]
3 Hb_031069_040 0.099132066 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_003209_150 0.1076797954 - - CLE9, putative [Ricinus communis]
5 Hb_033363_030 0.1095103228 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic [Jatropha curcas]
6 Hb_006243_010 0.1098792846 - - PREDICTED: cell wall protein IFF6 [Populus euphratica]
7 Hb_003654_020 0.1100152484 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
8 Hb_004126_050 0.1121673648 - - PREDICTED: L-type lectin-domain containing receptor kinase VII.1 [Tarenaya hassleriana]
9 Hb_000186_180 0.1152943684 - - PREDICTED: uncharacterized protein LOC105649287 [Jatropha curcas]
10 Hb_002818_160 0.1164195757 - - PREDICTED: uncharacterized protein LOC105642722 [Jatropha curcas]
11 Hb_000668_180 0.1207948626 - - hypothetical protein POPTR_0005s16490g [Populus trichocarpa]
12 Hb_046739_010 0.1253888105 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
13 Hb_000031_320 0.1276381789 - - unnamed protein product [Vitis vinifera]
14 Hb_019863_050 0.1294445406 - - PREDICTED: uncharacterized protein LOC103343426 [Prunus mume]
15 Hb_002400_260 0.1350307222 - - catalytic, putative [Ricinus communis]
16 Hb_000780_160 0.138013691 - - hypothetical protein RCOM_0483300 [Ricinus communis]
17 Hb_000334_010 0.138339345 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
18 Hb_011028_030 0.1403402742 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002211_020 0.1422447314 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 5-like [Jatropha curcas]
20 Hb_003767_060 0.1467336813 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]

Gene co-expression network

sample Hb_005337_140 Hb_005337_140 Hb_002307_120 Hb_002307_120 Hb_005337_140--Hb_002307_120 Hb_031069_040 Hb_031069_040 Hb_005337_140--Hb_031069_040 Hb_003209_150 Hb_003209_150 Hb_005337_140--Hb_003209_150 Hb_033363_030 Hb_033363_030 Hb_005337_140--Hb_033363_030 Hb_006243_010 Hb_006243_010 Hb_005337_140--Hb_006243_010 Hb_003654_020 Hb_003654_020 Hb_005337_140--Hb_003654_020 Hb_002818_160 Hb_002818_160 Hb_002307_120--Hb_002818_160 Hb_002307_120--Hb_003209_150 Hb_003767_060 Hb_003767_060 Hb_002307_120--Hb_003767_060 Hb_002307_120--Hb_003654_020 Hb_000186_180 Hb_000186_180 Hb_002307_120--Hb_000186_180 Hb_000373_160 Hb_000373_160 Hb_031069_040--Hb_000373_160 Hb_001269_030 Hb_001269_030 Hb_031069_040--Hb_001269_030 Hb_000116_090 Hb_000116_090 Hb_031069_040--Hb_000116_090 Hb_000668_180 Hb_000668_180 Hb_031069_040--Hb_000668_180 Hb_000307_150 Hb_000307_150 Hb_031069_040--Hb_000307_150 Hb_001369_340 Hb_001369_340 Hb_003209_150--Hb_001369_340 Hb_003209_150--Hb_003767_060 Hb_004117_380 Hb_004117_380 Hb_003209_150--Hb_004117_380 Hb_003209_150--Hb_003654_020 Hb_004017_030 Hb_004017_030 Hb_003209_150--Hb_004017_030 Hb_096224_050 Hb_096224_050 Hb_033363_030--Hb_096224_050 Hb_004979_080 Hb_004979_080 Hb_033363_030--Hb_004979_080 Hb_000027_110 Hb_000027_110 Hb_033363_030--Hb_000027_110 Hb_033363_030--Hb_000668_180 Hb_046739_010 Hb_046739_010 Hb_033363_030--Hb_046739_010 Hb_011028_030 Hb_011028_030 Hb_033363_030--Hb_011028_030 Hb_004126_050 Hb_004126_050 Hb_006243_010--Hb_004126_050 Hb_000780_160 Hb_000780_160 Hb_006243_010--Hb_000780_160 Hb_006243_010--Hb_000186_180 Hb_000061_440 Hb_000061_440 Hb_006243_010--Hb_000061_440 Hb_019863_050 Hb_019863_050 Hb_006243_010--Hb_019863_050 Hb_003654_020--Hb_000186_180 Hb_000732_300 Hb_000732_300 Hb_003654_020--Hb_000732_300 Hb_000031_320 Hb_000031_320 Hb_003654_020--Hb_000031_320 Hb_003654_020--Hb_002818_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0435707 0.0515398 0.0218486 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.102968

CAGE analysis