Hb_005345_010

Information

Type -
Description -
Location Contig5345: 5111-11579
Sequence    

Annotation

kegg
ID rcu:RCOM_0654820
description transcription factor, putative
nr
ID XP_012068940.1
description PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
swissprot
ID F4IEY4
description Telomere repeat-binding factor 5 OS=Arabidopsis thaliana GN=At1g72740 PE=2 SV=1
trembl
ID A0A067KX39
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24740 PE=4 SV=1
Gene Ontology
ID GO:0000786
description telomere repeat-binding factor 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47498: 11408-11575
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005345_010 0.0 - - PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
2 Hb_006059_020 0.1274626378 - - PREDICTED: uncharacterized protein LOC105648672 [Jatropha curcas]
3 Hb_003622_030 0.1293336818 - - PREDICTED: HAUS augmin-like complex subunit 1 [Jatropha curcas]
4 Hb_014720_110 0.1350638129 - - PREDICTED: GDSL esterase/lipase At5g62930 [Tarenaya hassleriana]
5 Hb_000035_270 0.1394160691 - - PREDICTED: uncharacterized protein LOC105637542 [Jatropha curcas]
6 Hb_003747_230 0.1416157466 - - PREDICTED: uncharacterized protein LOC105630239 isoform X1 [Jatropha curcas]
7 Hb_002872_050 0.1427090205 - - PREDICTED: thioredoxin-like 3-2, chloroplastic [Jatropha curcas]
8 Hb_000012_250 0.1446135377 - - hypothetical protein L484_019524 [Morus notabilis]
9 Hb_011689_120 0.1465201413 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
10 Hb_000107_150 0.1469850258 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
11 Hb_002540_080 0.1500989041 - - cysteine-type peptidase, putative [Ricinus communis]
12 Hb_003387_070 0.1515186092 - - Acyl-protein thioesterase, putative [Ricinus communis]
13 Hb_000174_030 0.1518057968 - - hypothetical protein RCOM_1077370 [Ricinus communis]
14 Hb_011512_110 0.152837353 - - PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_005446_010 0.1528781153 - - PREDICTED: zinc finger protein 830 [Jatropha curcas]
16 Hb_007199_020 0.1535602644 - - hypothetical protein CICLE_v10028570mg [Citrus clementina]
17 Hb_000510_030 0.1545761352 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
18 Hb_001322_110 0.1549322044 - - conserved hypothetical protein [Ricinus communis]
19 Hb_027459_020 0.1554978294 - - phosphoglycerate mutase, putative [Ricinus communis]
20 Hb_012799_170 0.1569164067 - - PREDICTED: protein GLC8 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005345_010 Hb_005345_010 Hb_006059_020 Hb_006059_020 Hb_005345_010--Hb_006059_020 Hb_003622_030 Hb_003622_030 Hb_005345_010--Hb_003622_030 Hb_014720_110 Hb_014720_110 Hb_005345_010--Hb_014720_110 Hb_000035_270 Hb_000035_270 Hb_005345_010--Hb_000035_270 Hb_003747_230 Hb_003747_230 Hb_005345_010--Hb_003747_230 Hb_002872_050 Hb_002872_050 Hb_005345_010--Hb_002872_050 Hb_021576_030 Hb_021576_030 Hb_006059_020--Hb_021576_030 Hb_006059_020--Hb_002872_050 Hb_014834_130 Hb_014834_130 Hb_006059_020--Hb_014834_130 Hb_001946_140 Hb_001946_140 Hb_006059_020--Hb_001946_140 Hb_011689_120 Hb_011689_120 Hb_006059_020--Hb_011689_120 Hb_012799_170 Hb_012799_170 Hb_003622_030--Hb_012799_170 Hb_002540_080 Hb_002540_080 Hb_003622_030--Hb_002540_080 Hb_003622_030--Hb_014720_110 Hb_000566_120 Hb_000566_120 Hb_003622_030--Hb_000566_120 Hb_002968_040 Hb_002968_040 Hb_003622_030--Hb_002968_040 Hb_011457_050 Hb_011457_050 Hb_003622_030--Hb_011457_050 Hb_006573_190 Hb_006573_190 Hb_014720_110--Hb_006573_190 Hb_003678_020 Hb_003678_020 Hb_014720_110--Hb_003678_020 Hb_001828_150 Hb_001828_150 Hb_014720_110--Hb_001828_150 Hb_004586_420 Hb_004586_420 Hb_014720_110--Hb_004586_420 Hb_000920_200 Hb_000920_200 Hb_014720_110--Hb_000920_200 Hb_007827_010 Hb_007827_010 Hb_000035_270--Hb_007827_010 Hb_002759_190 Hb_002759_190 Hb_000035_270--Hb_002759_190 Hb_000035_270--Hb_003678_020 Hb_000035_270--Hb_014720_110 Hb_000035_270--Hb_002872_050 Hb_000317_260 Hb_000317_260 Hb_000035_270--Hb_000317_260 Hb_003747_230--Hb_002759_190 Hb_003747_230--Hb_000317_260 Hb_001587_180 Hb_001587_180 Hb_003747_230--Hb_001587_180 Hb_005539_010 Hb_005539_010 Hb_003747_230--Hb_005539_010 Hb_004440_060 Hb_004440_060 Hb_003747_230--Hb_004440_060 Hb_000227_170 Hb_000227_170 Hb_003747_230--Hb_000227_170 Hb_002872_050--Hb_007827_010 Hb_003050_280 Hb_003050_280 Hb_002872_050--Hb_003050_280 Hb_000056_070 Hb_000056_070 Hb_002872_050--Hb_000056_070 Hb_000107_150 Hb_000107_150 Hb_002872_050--Hb_000107_150 Hb_001318_260 Hb_001318_260 Hb_002872_050--Hb_001318_260 Hb_002872_050--Hb_011689_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.95127 0.467239 7.09976 2.41349 2.81822 1.45626
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.9297 7.67312 5.20413 6.37599 7.53291

CAGE analysis