Hb_005348_010

Information

Type -
Description -
Location Contig5348: 1355-7770
Sequence    

Annotation

kegg
ID rcu:RCOM_0653260
description hypothetical protein
nr
ID XP_002521337.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S5R8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0653260 PE=4 SV=1
Gene Ontology
ID GO:0003677
description b-block binding subunit of isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47501: 706-1438 , PASA_asmbl_47502: 1481-1651 , PASA_asmbl_47504: 3478-5439 , PASA_asmbl_47505: 5789-6483 , PASA_asmbl_47506: 6679-7052
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005348_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000329_750 0.0462682469 - - PREDICTED: uncharacterized protein LOC105643205 [Jatropha curcas]
3 Hb_003805_050 0.0695834125 - - -
4 Hb_006295_020 0.0703171118 - - PREDICTED: serine/threonine-protein kinase ATR isoform X1 [Jatropha curcas]
5 Hb_003203_030 0.0710965447 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
6 Hb_005488_170 0.0716559035 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
7 Hb_002909_120 0.076557526 - - PREDICTED: transcription elongation factor SPT6 [Jatropha curcas]
8 Hb_000083_070 0.0768702688 - - PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Jatropha curcas]
9 Hb_000046_190 0.0770439138 - - PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]
10 Hb_000656_060 0.0794084065 - - DNA binding protein, putative [Ricinus communis]
11 Hb_099270_030 0.0828804722 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
12 Hb_000015_050 0.0835949387 - - hypothetical protein JCGZ_01495 [Jatropha curcas]
13 Hb_002600_060 0.0837936187 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
14 Hb_000925_090 0.084168549 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
15 Hb_000672_040 0.0847928466 - - PREDICTED: ENHANCER OF AG-4 protein 2 [Jatropha curcas]
16 Hb_002174_030 0.0858737277 - - transcription elongation factor s-II, putative [Ricinus communis]
17 Hb_005486_030 0.0864632125 transcription factor TF Family: PHD hypothetical protein POPTR_0017s10890g [Populus trichocarpa]
18 Hb_001726_050 0.0880861614 transcription factor TF Family: C3H Nucleic acid binding,zinc ion binding,DNA binding, putative isoform 1 [Theobroma cacao]
19 Hb_003119_080 0.0891650548 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
20 Hb_009767_080 0.0899618965 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]

Gene co-expression network

sample Hb_005348_010 Hb_005348_010 Hb_000329_750 Hb_000329_750 Hb_005348_010--Hb_000329_750 Hb_003805_050 Hb_003805_050 Hb_005348_010--Hb_003805_050 Hb_006295_020 Hb_006295_020 Hb_005348_010--Hb_006295_020 Hb_003203_030 Hb_003203_030 Hb_005348_010--Hb_003203_030 Hb_005488_170 Hb_005488_170 Hb_005348_010--Hb_005488_170 Hb_002909_120 Hb_002909_120 Hb_005348_010--Hb_002909_120 Hb_000329_750--Hb_003805_050 Hb_000329_750--Hb_006295_020 Hb_000329_750--Hb_005488_170 Hb_000329_750--Hb_003203_030 Hb_000329_750--Hb_002909_120 Hb_000083_070 Hb_000083_070 Hb_003805_050--Hb_000083_070 Hb_002095_070 Hb_002095_070 Hb_003805_050--Hb_002095_070 Hb_024185_010 Hb_024185_010 Hb_003805_050--Hb_024185_010 Hb_003805_050--Hb_006295_020 Hb_006295_020--Hb_000083_070 Hb_000041_090 Hb_000041_090 Hb_006295_020--Hb_000041_090 Hb_000265_230 Hb_000265_230 Hb_006295_020--Hb_000265_230 Hb_006295_020--Hb_003203_030 Hb_000331_560 Hb_000331_560 Hb_003203_030--Hb_000331_560 Hb_018118_010 Hb_018118_010 Hb_003203_030--Hb_018118_010 Hb_006816_430 Hb_006816_430 Hb_003203_030--Hb_006816_430 Hb_001862_180 Hb_001862_180 Hb_003203_030--Hb_001862_180 Hb_001259_020 Hb_001259_020 Hb_003203_030--Hb_001259_020 Hb_002600_060 Hb_002600_060 Hb_005488_170--Hb_002600_060 Hb_005701_130 Hb_005701_130 Hb_005488_170--Hb_005701_130 Hb_005488_170--Hb_002909_120 Hb_010998_020 Hb_010998_020 Hb_005488_170--Hb_010998_020 Hb_012053_090 Hb_012053_090 Hb_005488_170--Hb_012053_090 Hb_002333_050 Hb_002333_050 Hb_002909_120--Hb_002333_050 Hb_000046_190 Hb_000046_190 Hb_002909_120--Hb_000046_190 Hb_003119_080 Hb_003119_080 Hb_002909_120--Hb_003119_080 Hb_009486_170 Hb_009486_170 Hb_002909_120--Hb_009486_170 Hb_188063_010 Hb_188063_010 Hb_002909_120--Hb_188063_010 Hb_001133_030 Hb_001133_030 Hb_002909_120--Hb_001133_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.48067 4.25915 1.53017 1.31027 2.58537 2.72717
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.43971 1.1973 2.53274 2.85102 5.30766

CAGE analysis