Hb_005348_110

Information

Type -
Description -
Location Contig5348: 108028-114521
Sequence    

Annotation

kegg
ID rcu:RCOM_0710990
description polygalacturonase, putative (EC:3.2.1.15)
nr
ID XP_012077081.1
description PREDICTED: probable polygalacturonase [Jatropha curcas]
swissprot
ID A7PZL3
description Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1
trembl
ID A0A067KQ33
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07510 PE=3 SV=1
Gene Ontology
ID GO:0005576
description probable polygalacturonase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47513: 108023-114418 , PASA_asmbl_47514: 113075-113428
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005348_110 0.0 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
2 Hb_009674_050 0.0913288555 - - Endosomal P24A protein precursor, putative [Ricinus communis]
3 Hb_003746_010 0.1037230214 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001216_110 0.1092613342 - - PREDICTED: protein GPR107-like [Jatropha curcas]
5 Hb_009252_010 0.1119990067 - - PREDICTED: kinesin light chain [Jatropha curcas]
6 Hb_000011_220 0.1173239242 - - PREDICTED: uncharacterized protein LOC105631313 [Jatropha curcas]
7 Hb_010175_030 0.1198451265 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
8 Hb_002611_010 0.1281985596 - - amino acid transporter, putative [Ricinus communis]
9 Hb_000390_050 0.1286416451 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
10 Hb_000417_170 0.1305541162 - - PREDICTED: uncharacterized protein LOC105649689 [Jatropha curcas]
11 Hb_000836_060 0.1307961789 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 [Jatropha curcas]
12 Hb_009674_010 0.1320238652 - - AAEL007687-PA [Aedes aegypti]
13 Hb_028639_030 0.1329952993 - - PREDICTED: transmembrane 9 superfamily member 2-like [Jatropha curcas]
14 Hb_002164_020 0.1336796442 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002129_020 0.1345438126 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX14 [Jatropha curcas]
16 Hb_000920_310 0.1354491017 - - Ran GTPase binding protein, putative [Ricinus communis]
17 Hb_030959_010 0.1358196077 - - cullin, putative [Ricinus communis]
18 Hb_000849_120 0.1371183552 - - PREDICTED: linoleate 9S-lipoxygenase 6-like [Jatropha curcas]
19 Hb_000417_390 0.1372023428 - - PREDICTED: ER lumen protein-retaining receptor A [Jatropha curcas]
20 Hb_001481_130 0.1380160408 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005348_110 Hb_005348_110 Hb_009674_050 Hb_009674_050 Hb_005348_110--Hb_009674_050 Hb_003746_010 Hb_003746_010 Hb_005348_110--Hb_003746_010 Hb_001216_110 Hb_001216_110 Hb_005348_110--Hb_001216_110 Hb_009252_010 Hb_009252_010 Hb_005348_110--Hb_009252_010 Hb_000011_220 Hb_000011_220 Hb_005348_110--Hb_000011_220 Hb_010175_030 Hb_010175_030 Hb_005348_110--Hb_010175_030 Hb_009674_050--Hb_003746_010 Hb_002400_060 Hb_002400_060 Hb_009674_050--Hb_002400_060 Hb_009674_050--Hb_009252_010 Hb_030959_010 Hb_030959_010 Hb_009674_050--Hb_030959_010 Hb_005116_140 Hb_005116_140 Hb_009674_050--Hb_005116_140 Hb_001029_040 Hb_001029_040 Hb_003746_010--Hb_001029_040 Hb_005192_010 Hb_005192_010 Hb_003746_010--Hb_005192_010 Hb_001882_020 Hb_001882_020 Hb_003746_010--Hb_001882_020 Hb_003682_070 Hb_003682_070 Hb_003746_010--Hb_003682_070 Hb_009252_030 Hb_009252_030 Hb_003746_010--Hb_009252_030 Hb_000679_040 Hb_000679_040 Hb_001216_110--Hb_000679_040 Hb_028639_030 Hb_028639_030 Hb_001216_110--Hb_028639_030 Hb_021576_070 Hb_021576_070 Hb_001216_110--Hb_021576_070 Hb_001969_140 Hb_001969_140 Hb_001216_110--Hb_001969_140 Hb_002129_020 Hb_002129_020 Hb_001216_110--Hb_002129_020 Hb_001195_310 Hb_001195_310 Hb_001216_110--Hb_001195_310 Hb_009252_010--Hb_030959_010 Hb_000120_860 Hb_000120_860 Hb_009252_010--Hb_000120_860 Hb_005228_040 Hb_005228_040 Hb_009252_010--Hb_005228_040 Hb_000684_390 Hb_000684_390 Hb_009252_010--Hb_000684_390 Hb_000011_220--Hb_009674_050 Hb_002164_020 Hb_002164_020 Hb_000011_220--Hb_002164_020 Hb_000011_220--Hb_003746_010 Hb_000011_220--Hb_010175_030 Hb_059741_010 Hb_059741_010 Hb_000011_220--Hb_059741_010 Hb_000390_030 Hb_000390_030 Hb_010175_030--Hb_000390_030 Hb_010175_030--Hb_009674_050 Hb_010175_030--Hb_009252_010 Hb_177343_010 Hb_177343_010 Hb_010175_030--Hb_177343_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.64911 9.31409 12.0779 53.7848 9.81317 6.82261
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.9576 8.56487 17.5166 15.9828 44.1945

CAGE analysis