Hb_005355_030

Information

Type -
Description -
Location Contig5355: 59908-62579
Sequence    

Annotation

kegg
ID cit:102626823
description CBS domain-containing protein CBSX3, mitochondrial-like
nr
ID XP_012077615.1
description PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
swissprot
ID Q9LEV3
description CBS domain-containing protein CBSX3, mitochondrial OS=Arabidopsis thaliana GN=CBSX3 PE=1 SV=1
trembl
ID A0A067LB12
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17263 PE=4 SV=1
Gene Ontology
ID GO:0009628
description cbs domain-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47532: 60106-62651 , PASA_asmbl_47534: 60209-60432
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005355_030 0.0 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
2 Hb_000576_020 0.0794950933 - - PREDICTED: uncharacterized protein LOC105638286 [Jatropha curcas]
3 Hb_000329_590 0.0833929367 - - catalytic, putative [Ricinus communis]
4 Hb_000282_030 0.0845064404 - - K(+) efflux antiporter 4 [Glycine soja]
5 Hb_002078_220 0.0874538746 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
6 Hb_002325_040 0.0876130415 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
7 Hb_006916_040 0.0893789722 - - 60S ribosomal protein L7a, putative [Ricinus communis]
8 Hb_003096_060 0.089694863 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
9 Hb_000076_160 0.0921498679 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
10 Hb_000160_350 0.0934590058 - - PREDICTED: double-stranded RNA-binding protein 4 isoform X3 [Vitis vinifera]
11 Hb_106552_020 0.0946907575 - - PREDICTED: serine/arginine-rich splicing factor RS2Z33 isoform X1 [Jatropha curcas]
12 Hb_154580_010 0.0955041297 - - hypothetical protein PRUPE_ppa002109mg [Prunus persica]
13 Hb_000928_220 0.095869561 - - PREDICTED: protein SCAI [Jatropha curcas]
14 Hb_001832_130 0.0969189269 - - PREDICTED: WD-40 repeat-containing protein MSI4 [Jatropha curcas]
15 Hb_005965_030 0.0975519843 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
16 Hb_000358_230 0.0975698705 - - protein phosphatases pp1 regulatory subunit, putative [Ricinus communis]
17 Hb_001143_180 0.0993153235 - - PREDICTED: replication factor C subunit 5 [Jatropha curcas]
18 Hb_002272_020 0.0999175616 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-3 [Jatropha curcas]
19 Hb_012753_170 0.1014036494 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X2 [Jatropha curcas]
20 Hb_004631_180 0.1016160303 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]

Gene co-expression network

sample Hb_005355_030 Hb_005355_030 Hb_000576_020 Hb_000576_020 Hb_005355_030--Hb_000576_020 Hb_000329_590 Hb_000329_590 Hb_005355_030--Hb_000329_590 Hb_000282_030 Hb_000282_030 Hb_005355_030--Hb_000282_030 Hb_002078_220 Hb_002078_220 Hb_005355_030--Hb_002078_220 Hb_002325_040 Hb_002325_040 Hb_005355_030--Hb_002325_040 Hb_006916_040 Hb_006916_040 Hb_005355_030--Hb_006916_040 Hb_004631_180 Hb_004631_180 Hb_000576_020--Hb_004631_180 Hb_000576_020--Hb_006916_040 Hb_000076_160 Hb_000076_160 Hb_000576_020--Hb_000076_160 Hb_002311_070 Hb_002311_070 Hb_000576_020--Hb_002311_070 Hb_000928_220 Hb_000928_220 Hb_000576_020--Hb_000928_220 Hb_001077_030 Hb_001077_030 Hb_000576_020--Hb_001077_030 Hb_002067_030 Hb_002067_030 Hb_000329_590--Hb_002067_030 Hb_005389_100 Hb_005389_100 Hb_000329_590--Hb_005389_100 Hb_154580_010 Hb_154580_010 Hb_000329_590--Hb_154580_010 Hb_000260_680 Hb_000260_680 Hb_000329_590--Hb_000260_680 Hb_009659_050 Hb_009659_050 Hb_000329_590--Hb_009659_050 Hb_118026_010 Hb_118026_010 Hb_000282_030--Hb_118026_010 Hb_000282_030--Hb_006916_040 Hb_000282_030--Hb_000076_160 Hb_001205_200 Hb_001205_200 Hb_000282_030--Hb_001205_200 Hb_002272_020 Hb_002272_020 Hb_000282_030--Hb_002272_020 Hb_000886_050 Hb_000886_050 Hb_002078_220--Hb_000886_050 Hb_000070_080 Hb_000070_080 Hb_002078_220--Hb_000070_080 Hb_002078_220--Hb_000076_160 Hb_008511_090 Hb_008511_090 Hb_002078_220--Hb_008511_090 Hb_008103_060 Hb_008103_060 Hb_002078_220--Hb_008103_060 Hb_002876_130 Hb_002876_130 Hb_002078_220--Hb_002876_130 Hb_002477_250 Hb_002477_250 Hb_002325_040--Hb_002477_250 Hb_001135_120 Hb_001135_120 Hb_002325_040--Hb_001135_120 Hb_005542_050 Hb_005542_050 Hb_002325_040--Hb_005542_050 Hb_140049_040 Hb_140049_040 Hb_002325_040--Hb_140049_040 Hb_184798_080 Hb_184798_080 Hb_002325_040--Hb_184798_080 Hb_001147_110 Hb_001147_110 Hb_002325_040--Hb_001147_110 Hb_006916_040--Hb_004631_180 Hb_000256_190 Hb_000256_190 Hb_006916_040--Hb_000256_190 Hb_001051_080 Hb_001051_080 Hb_006916_040--Hb_001051_080 Hb_006916_040--Hb_000076_160 Hb_033834_030 Hb_033834_030 Hb_006916_040--Hb_033834_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
68.8938 87.1562 73.3182 43.9179 69.0896 58.0657
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.6395 51.746 19.5375 55.9506 18.8908

CAGE analysis