Hb_005356_020

Information

Type -
Description -
Location Contig5356: 38673-39104
Sequence    

Annotation

kegg
ID rcu:RCOM_1078780
description glutaredoxin, grx, putative
nr
ID XP_002514866.1
description glutaredoxin, grx, putative [Ricinus communis]
swissprot
ID Q6K609
description Glutaredoxin-C3 OS=Oryza sativa subsp. japonica GN=GRXC3 PE=2 SV=1
trembl
ID B9RM97
description Glutaredoxin, grx, putative OS=Ricinus communis GN=RCOM_1078780 PE=4 SV=1
Gene Ontology
ID GO:0005623
description glutaredoxin-c1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005356_020 0.0 - - glutaredoxin, grx, putative [Ricinus communis]
2 Hb_001552_010 0.0007293903 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003687_060 0.0037081366 - - conserved hypothetical protein [Ricinus communis]
4 Hb_010128_140 0.0042012054 - - hypothetical protein JCGZ_23164 [Jatropha curcas]
5 Hb_003038_020 0.0044346197 - - unnamed protein product [Coffea canephora]
6 Hb_005333_090 0.0051930322 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
7 Hb_003849_210 0.0067471123 transcription factor TF Family: ERF hypothetical protein RCOM_0793640 [Ricinus communis]
8 Hb_004899_240 0.0084884249 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002157_110 0.0115580315 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
10 Hb_015447_010 0.0130183925 - - PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
11 Hb_006198_160 0.0152281724 - - hypothetical protein POPTR_0002s24290g [Populus trichocarpa]
12 Hb_036116_010 0.0169230803 - - JHL22C18.10 [Jatropha curcas]
13 Hb_090521_010 0.0186332251 - - Major allergen Pru ar, putative [Ricinus communis]
14 Hb_101724_010 0.0204924298 - - glutamate receptor family protein [Populus trichocarpa]
15 Hb_000471_130 0.02111057 - - conserved hypothetical protein [Ricinus communis]
16 Hb_093541_010 0.0215368063 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002217_010 0.0220043829 - - Peroxiredoxin, putative [Ricinus communis]
18 Hb_000087_110 0.023499579 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001002_010 0.0269232234 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006663_120 0.0281265472 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005356_020 Hb_005356_020 Hb_001552_010 Hb_001552_010 Hb_005356_020--Hb_001552_010 Hb_003687_060 Hb_003687_060 Hb_005356_020--Hb_003687_060 Hb_010128_140 Hb_010128_140 Hb_005356_020--Hb_010128_140 Hb_003038_020 Hb_003038_020 Hb_005356_020--Hb_003038_020 Hb_005333_090 Hb_005333_090 Hb_005356_020--Hb_005333_090 Hb_003849_210 Hb_003849_210 Hb_005356_020--Hb_003849_210 Hb_001552_010--Hb_010128_140 Hb_001552_010--Hb_003687_060 Hb_001552_010--Hb_003038_020 Hb_001552_010--Hb_005333_090 Hb_001552_010--Hb_003849_210 Hb_003687_060--Hb_003038_020 Hb_003687_060--Hb_005333_090 Hb_004899_240 Hb_004899_240 Hb_003687_060--Hb_004899_240 Hb_002157_110 Hb_002157_110 Hb_003687_060--Hb_002157_110 Hb_010128_140--Hb_003849_210 Hb_010128_140--Hb_003687_060 Hb_010128_140--Hb_003038_020 Hb_015447_010 Hb_015447_010 Hb_010128_140--Hb_015447_010 Hb_003038_020--Hb_005333_090 Hb_003038_020--Hb_004899_240 Hb_003038_020--Hb_002157_110 Hb_005333_090--Hb_004899_240 Hb_005333_090--Hb_002157_110 Hb_003849_210--Hb_015447_010 Hb_006198_160 Hb_006198_160 Hb_003849_210--Hb_006198_160 Hb_003849_210--Hb_003687_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0569978 0.418351 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis