Hb_005356_040

Information

Type -
Description -
Location Contig5356: 47185-53327
Sequence    

Annotation

kegg
ID rcu:RCOM_1078760
description receptor serine-threonine protein kinase, putative (EC:2.7.10.2)
nr
ID XP_002514864.1
description receptor serine-threonine protein kinase, putative [Ricinus communis]
swissprot
ID Q9FE20
description Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1
trembl
ID B9RM95
description Receptor serine-threonine protein kinase, putative OS=Ricinus communis GN=RCOM_1078760 PE=3 SV=1
Gene Ontology
ID GO:0005886
description serine threonine-protein kinase pbs1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47535: 47499-47669 , PASA_asmbl_47536: 48144-48483
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005356_040 0.0 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
2 Hb_000465_270 0.0937877873 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000928_110 0.0950740928 - - PREDICTED: uncharacterized protein LOC105632499 isoform X1 [Jatropha curcas]
4 Hb_000007_140 0.0970409052 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570 [Jatropha curcas]
5 Hb_000110_140 0.1127148614 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
6 Hb_004800_100 0.117932048 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001504_330 0.1184439541 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like [Jatropha curcas]
8 Hb_000300_430 0.1197337531 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
9 Hb_004627_030 0.1245278211 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
10 Hb_000749_050 0.1255878315 - - mitochondrial thioredoxin [Hevea brasiliensis]
11 Hb_002045_070 0.1275769238 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
12 Hb_000465_300 0.1293109372 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
13 Hb_002016_080 0.1295292914 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
14 Hb_000392_310 0.1311314763 - - conserved hypothetical protein [Ricinus communis]
15 Hb_011021_040 0.1316275045 transcription factor TF Family: Trihelix PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH9 [Jatropha curcas]
16 Hb_148209_010 0.132640915 - - RAS-related GTP-binding family protein [Populus trichocarpa]
17 Hb_000120_020 0.1345135812 - - PREDICTED: inositol 3-kinase [Jatropha curcas]
18 Hb_005074_030 0.1347491891 - - -
19 Hb_001222_080 0.1360394816 - - PREDICTED: uncharacterized protein LOC105642435 isoform X1 [Jatropha curcas]
20 Hb_000061_230 0.1366254842 - - PREDICTED: putative glycosyltransferase 5 [Jatropha curcas]

Gene co-expression network

sample Hb_005356_040 Hb_005356_040 Hb_000465_270 Hb_000465_270 Hb_005356_040--Hb_000465_270 Hb_000928_110 Hb_000928_110 Hb_005356_040--Hb_000928_110 Hb_000007_140 Hb_000007_140 Hb_005356_040--Hb_000007_140 Hb_000110_140 Hb_000110_140 Hb_005356_040--Hb_000110_140 Hb_004800_100 Hb_004800_100 Hb_005356_040--Hb_004800_100 Hb_001504_330 Hb_001504_330 Hb_005356_040--Hb_001504_330 Hb_004627_030 Hb_004627_030 Hb_000465_270--Hb_004627_030 Hb_000465_270--Hb_000928_110 Hb_075247_010 Hb_075247_010 Hb_000465_270--Hb_075247_010 Hb_000465_270--Hb_004800_100 Hb_126757_010 Hb_126757_010 Hb_000465_270--Hb_126757_010 Hb_000928_110--Hb_004800_100 Hb_017131_010 Hb_017131_010 Hb_000928_110--Hb_017131_010 Hb_005488_200 Hb_005488_200 Hb_000928_110--Hb_005488_200 Hb_000700_040 Hb_000700_040 Hb_000928_110--Hb_000700_040 Hb_003376_250 Hb_003376_250 Hb_000928_110--Hb_003376_250 Hb_000392_310 Hb_000392_310 Hb_000007_140--Hb_000392_310 Hb_000007_140--Hb_001504_330 Hb_013399_050 Hb_013399_050 Hb_000007_140--Hb_013399_050 Hb_000603_080 Hb_000603_080 Hb_000007_140--Hb_000603_080 Hb_009803_050 Hb_009803_050 Hb_000007_140--Hb_009803_050 Hb_007218_120 Hb_007218_120 Hb_000110_140--Hb_007218_120 Hb_000061_230 Hb_000061_230 Hb_000110_140--Hb_000061_230 Hb_003376_180 Hb_003376_180 Hb_000110_140--Hb_003376_180 Hb_000454_090 Hb_000454_090 Hb_000110_140--Hb_000454_090 Hb_000173_470 Hb_000173_470 Hb_000110_140--Hb_000173_470 Hb_002660_170 Hb_002660_170 Hb_000110_140--Hb_002660_170 Hb_000252_100 Hb_000252_100 Hb_004800_100--Hb_000252_100 Hb_004800_100--Hb_004627_030 Hb_000300_430 Hb_000300_430 Hb_004800_100--Hb_000300_430 Hb_000173_410 Hb_000173_410 Hb_004800_100--Hb_000173_410 Hb_001123_160 Hb_001123_160 Hb_004800_100--Hb_001123_160 Hb_002045_070 Hb_002045_070 Hb_004800_100--Hb_002045_070 Hb_001504_330--Hb_000603_080 Hb_002799_040 Hb_002799_040 Hb_001504_330--Hb_002799_040 Hb_031910_020 Hb_031910_020 Hb_001504_330--Hb_031910_020 Hb_000367_260 Hb_000367_260 Hb_001504_330--Hb_000367_260 Hb_003360_040 Hb_003360_040 Hb_001504_330--Hb_003360_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.87751 8.0082 3.05099 12.4803 2.77188 1.93473
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.37316 14.3492 14.0206 6.30274 6.25812

CAGE analysis