Hb_005356_060

Information

Type -
Description -
Location Contig5356: 67420-68528
Sequence    

Annotation

kegg
ID pop:POPTR_0013s14620g
description hypothetical protein
nr
ID XP_006376536.1
description hypothetical protein POPTR_0013s14620g, partial [Populus trichocarpa]
swissprot
ID P0C7Q7
description Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1
trembl
ID U5FSZ0
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0013s14620g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005356_060 0.0 - - hypothetical protein POPTR_0013s14620g, partial [Populus trichocarpa]
2 Hb_001160_010 0.2446124809 - - -
3 Hb_021068_010 0.2837869195 - - PREDICTED: MADS-box transcription factor 23-like isoform X1 [Jatropha curcas]
4 Hb_004361_020 0.2981596309 - - PREDICTED: uncharacterized protein LOC102625775 [Citrus sinensis]
5 Hb_003209_160 0.2991997256 - - PREDICTED: putative SNAP25 homologous protein SNAP30 [Populus euphratica]
6 Hb_001019_120 0.3036310949 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
7 Hb_000101_280 0.3071370365 - - hypothetical protein POPTR_0018s02450g [Populus trichocarpa]
8 Hb_000140_430 0.3212060928 - - -
9 Hb_087426_010 0.3458682807 - - PREDICTED: uncharacterized protein LOC105803348 [Gossypium raimondii]
10 Hb_000085_030 0.349149242 - - -
11 Hb_005451_020 0.3504663407 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
12 Hb_000258_020 0.3524393861 - - PREDICTED: RING-H2 finger protein ATL74 [Jatropha curcas]
13 Hb_000640_140 0.355133211 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002518_110 0.3557093206 - - 1-amino-cyclopropane-1-carboxylic acid oxidase [Manihot esculenta]
15 Hb_000028_640 0.3626118894 - - Auxin efflux carrier component, putative [Ricinus communis]
16 Hb_007933_020 0.3652822092 - - PREDICTED: uncharacterized protein At4g37920, chloroplastic [Jatropha curcas]
17 Hb_036702_010 0.3701603242 - - phosphoprotein phosphatase, putative [Ricinus communis]
18 Hb_163663_010 0.3770537794 - - PREDICTED: uncharacterized protein LOC105629934 [Jatropha curcas]
19 Hb_037790_010 0.3781467808 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
20 Hb_001965_020 0.3786984982 - - hypothetical protein B456_013G048700 [Gossypium raimondii]

Gene co-expression network

sample Hb_005356_060 Hb_005356_060 Hb_001160_010 Hb_001160_010 Hb_005356_060--Hb_001160_010 Hb_021068_010 Hb_021068_010 Hb_005356_060--Hb_021068_010 Hb_004361_020 Hb_004361_020 Hb_005356_060--Hb_004361_020 Hb_003209_160 Hb_003209_160 Hb_005356_060--Hb_003209_160 Hb_001019_120 Hb_001019_120 Hb_005356_060--Hb_001019_120 Hb_000101_280 Hb_000101_280 Hb_005356_060--Hb_000101_280 Hb_005451_020 Hb_005451_020 Hb_001160_010--Hb_005451_020 Hb_001160_010--Hb_000101_280 Hb_000140_430 Hb_000140_430 Hb_001160_010--Hb_000140_430 Hb_153142_010 Hb_153142_010 Hb_001160_010--Hb_153142_010 Hb_001160_010--Hb_021068_010 Hb_021068_010--Hb_001019_120 Hb_032920_100 Hb_032920_100 Hb_021068_010--Hb_032920_100 Hb_183574_010 Hb_183574_010 Hb_021068_010--Hb_183574_010 Hb_009973_020 Hb_009973_020 Hb_021068_010--Hb_009973_020 Hb_021068_010--Hb_004361_020 Hb_001709_130 Hb_001709_130 Hb_021068_010--Hb_001709_130 Hb_004361_020--Hb_001709_130 Hb_004361_020--Hb_001019_120 Hb_004361_020--Hb_183574_010 Hb_036702_010 Hb_036702_010 Hb_004361_020--Hb_036702_010 Hb_000236_090 Hb_000236_090 Hb_004361_020--Hb_000236_090 Hb_007545_020 Hb_007545_020 Hb_003209_160--Hb_007545_020 Hb_164370_010 Hb_164370_010 Hb_003209_160--Hb_164370_010 Hb_002490_050 Hb_002490_050 Hb_003209_160--Hb_002490_050 Hb_050286_020 Hb_050286_020 Hb_003209_160--Hb_050286_020 Hb_138652_020 Hb_138652_020 Hb_003209_160--Hb_138652_020 Hb_001019_120--Hb_036702_010 Hb_067776_020 Hb_067776_020 Hb_001019_120--Hb_067776_020 Hb_002159_030 Hb_002159_030 Hb_001019_120--Hb_002159_030 Hb_004324_240 Hb_004324_240 Hb_001019_120--Hb_004324_240 Hb_007933_020 Hb_007933_020 Hb_001019_120--Hb_007933_020 Hb_004987_070 Hb_004987_070 Hb_001019_120--Hb_004987_070 Hb_163663_010 Hb_163663_010 Hb_000101_280--Hb_163663_010 Hb_000709_020 Hb_000709_020 Hb_000101_280--Hb_000709_020 Hb_087426_010 Hb_087426_010 Hb_000101_280--Hb_087426_010 Hb_037790_010 Hb_037790_010 Hb_000101_280--Hb_037790_010 Hb_041476_010 Hb_041476_010 Hb_000101_280--Hb_041476_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0755661 0 0 0.0204402 0.0252807 0.117806
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0922464

CAGE analysis