Hb_005357_030

Information

Type -
Description -
Location Contig5357: 41086-43234
Sequence    

Annotation

kegg
ID rcu:RCOM_0905800
description hypothetical protein
nr
ID XP_012091415.1
description PREDICTED: pyruvate, phosphate dikinase regulatory protein 1, chloroplastic [Jatropha curcas]
swissprot
ID Q8GVP6
description Probable pyruvate, phosphate dikinase regulatory protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PDRP1 PE=2 SV=2
trembl
ID A0A067JDI5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21274 PE=3 SV=1
Gene Ontology
ID GO:0005524
description probable phosphate dikinase regulatory chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005357_030 0.0 - - PREDICTED: pyruvate, phosphate dikinase regulatory protein 1, chloroplastic [Jatropha curcas]
2 Hb_004223_280 0.0538374224 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
3 Hb_002685_170 0.0578054312 - - hypothetical protein EUTSA_v10019281mg [Eutrema salsugineum]
4 Hb_007590_050 0.0592996474 - - NudC domain-containing protein, putative [Ricinus communis]
5 Hb_001138_050 0.0642401691 - - hypothetical protein JCGZ_15696 [Jatropha curcas]
6 Hb_019253_020 0.0666498867 - - PREDICTED: uncharacterized protein LOC105647727 [Jatropha curcas]
7 Hb_001226_160 0.0675504371 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
8 Hb_000109_160 0.0682652424 - - hypothetical protein PRUPE_ppa012786mg [Prunus persica]
9 Hb_000656_400 0.0693429665 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
10 Hb_000251_130 0.070977079 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
11 Hb_001159_140 0.0747550948 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
12 Hb_000510_130 0.076827136 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
13 Hb_003126_080 0.0784998629 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
14 Hb_001073_070 0.0802279545 - - PREDICTED: uncharacterized protein LOC105644546 isoform X1 [Jatropha curcas]
15 Hb_005305_080 0.0803810872 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
16 Hb_002137_020 0.0812938957 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_004491_010 0.0816020017 - - 60S ribosomal protein L51, putative [Ricinus communis]
18 Hb_020956_020 0.0822602313 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
19 Hb_006332_020 0.0832591874 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
20 Hb_000554_020 0.0832867003 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Jatropha curcas]

Gene co-expression network

sample Hb_005357_030 Hb_005357_030 Hb_004223_280 Hb_004223_280 Hb_005357_030--Hb_004223_280 Hb_002685_170 Hb_002685_170 Hb_005357_030--Hb_002685_170 Hb_007590_050 Hb_007590_050 Hb_005357_030--Hb_007590_050 Hb_001138_050 Hb_001138_050 Hb_005357_030--Hb_001138_050 Hb_019253_020 Hb_019253_020 Hb_005357_030--Hb_019253_020 Hb_001226_160 Hb_001226_160 Hb_005357_030--Hb_001226_160 Hb_002137_020 Hb_002137_020 Hb_004223_280--Hb_002137_020 Hb_004223_280--Hb_002685_170 Hb_000613_140 Hb_000613_140 Hb_004223_280--Hb_000613_140 Hb_001477_130 Hb_001477_130 Hb_004223_280--Hb_001477_130 Hb_000510_130 Hb_000510_130 Hb_004223_280--Hb_000510_130 Hb_004491_010 Hb_004491_010 Hb_002685_170--Hb_004491_010 Hb_002685_170--Hb_007590_050 Hb_028995_040 Hb_028995_040 Hb_002685_170--Hb_028995_040 Hb_003126_080 Hb_003126_080 Hb_002685_170--Hb_003126_080 Hb_000109_160 Hb_000109_160 Hb_007590_050--Hb_000109_160 Hb_000656_400 Hb_000656_400 Hb_007590_050--Hb_000656_400 Hb_020956_020 Hb_020956_020 Hb_007590_050--Hb_020956_020 Hb_007590_050--Hb_003126_080 Hb_000398_180 Hb_000398_180 Hb_001138_050--Hb_000398_180 Hb_000720_120 Hb_000720_120 Hb_001138_050--Hb_000720_120 Hb_001377_290 Hb_001377_290 Hb_001138_050--Hb_001377_290 Hb_001259_090 Hb_001259_090 Hb_001138_050--Hb_001259_090 Hb_001138_050--Hb_019253_020 Hb_019253_020--Hb_000656_400 Hb_000251_130 Hb_000251_130 Hb_019253_020--Hb_000251_130 Hb_019253_020--Hb_000613_140 Hb_006332_020 Hb_006332_020 Hb_019253_020--Hb_006332_020 Hb_001226_160--Hb_000656_400 Hb_000056_200 Hb_000056_200 Hb_001226_160--Hb_000056_200 Hb_002660_080 Hb_002660_080 Hb_001226_160--Hb_002660_080 Hb_096563_010 Hb_096563_010 Hb_001226_160--Hb_096563_010 Hb_002226_070 Hb_002226_070 Hb_001226_160--Hb_002226_070 Hb_003615_010 Hb_003615_010 Hb_001226_160--Hb_003615_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.3094 17.1026 5.35419 8.64491 19.6687 20.2604
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.1307 31.0556 19.9024 12.5691 6.9788

CAGE analysis