Hb_005357_110

Information

Type -
Description -
Location Contig5357: 104821-109734
Sequence    

Annotation

kegg
ID crb:CARUB_v10020456mg
description hypothetical protein
nr
ID KJB13592.1
description hypothetical protein B456_002G083000 [Gossypium raimondii]
swissprot
ID P69309
description Polyubiquitin OS=Avena fatua PE=2 SV=2
trembl
ID A0A0D2M8C6
description Gossypium raimondii chromosome 2, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_002G083000 PE=4 SV=1
Gene Ontology
ID GO:0005634
description polyubiquitin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47551: 104654-105909 , PASA_asmbl_47552: 104660-105908
cDNA
(Sanger)
(ID:Location)		 004_M12.ab1: 104654-105587 , 009_E21.ab1: 104654-105531 , 015_G22.ab1: 104660-105396 , 016_F09.ab1: 105331-105903 , 018_C24.ab1: 104654-105354 , 020_G07.ab1: 104654-105547 , 030_I02.ab1: 104654-105489 , 034_A11.ab1: 104654-105494 , 036_K18.ab1: 104652-105566 , 037_N15.ab1: 104660-105581 , 038_H15.ab1: 104654-105587 , 038_I15.ab1: 104654-105584 , 042_J05.ab1: 104654-105543 , 043_G20.ab1: 104654-105530 , 046_D17.ab1: 104654-105571

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005357_110 0.0 - - hypothetical protein B456_002G083000 [Gossypium raimondii]
2 Hb_000032_410 0.0734365088 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
3 Hb_029253_010 0.0737548766 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
4 Hb_003740_020 0.0809811748 - - PREDICTED: methylglutaconyl-CoA hydratase, mitochondrial isoform X2 [Jatropha curcas]
5 Hb_000915_130 0.0895034483 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
6 Hb_004730_020 0.0929679511 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]
7 Hb_005511_130 0.0944870871 - - PREDICTED: transmembrane protein 115-like [Populus euphratica]
8 Hb_006925_050 0.100810004 - - PREDICTED: inactive rhomboid protein 1-like [Jatropha curcas]
9 Hb_091318_010 0.1065079109 - - hypothetical protein POPTR_0001s09520g [Populus trichocarpa]
10 Hb_003687_080 0.1083811971 - - PREDICTED: casein kinase I-like [Jatropha curcas]
11 Hb_002498_240 0.1084254245 - - PREDICTED: glucan endo-1,3-beta-glucosidase 1 isoform X1 [Jatropha curcas]
12 Hb_006829_070 0.1106233351 - - PREDICTED: uncharacterized protein LOC105632920 [Jatropha curcas]
13 Hb_002217_320 0.1118009854 - - PREDICTED: probable O-acetyltransferase CAS1 isoform X2 [Jatropha curcas]
14 Hb_002900_150 0.1129193775 - - PREDICTED: syntaxin-81 [Jatropha curcas]
15 Hb_004545_080 0.1160580321 - - protein with unknown function [Ricinus communis]
16 Hb_012762_040 0.116240929 - - big map kinase/bmk, putative [Ricinus communis]
17 Hb_001999_320 0.1165173461 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
18 Hb_021409_070 0.1168168868 - - PREDICTED: transcription factor bHLH157 isoform X1 [Jatropha curcas]
19 Hb_000922_320 0.1168784661 - - hypothetical protein B456_001G071400 [Gossypium raimondii]
20 Hb_006120_060 0.1180951352 - - O-acetyltransferase family protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_005357_110 Hb_005357_110 Hb_000032_410 Hb_000032_410 Hb_005357_110--Hb_000032_410 Hb_029253_010 Hb_029253_010 Hb_005357_110--Hb_029253_010 Hb_003740_020 Hb_003740_020 Hb_005357_110--Hb_003740_020 Hb_000915_130 Hb_000915_130 Hb_005357_110--Hb_000915_130 Hb_004730_020 Hb_004730_020 Hb_005357_110--Hb_004730_020 Hb_005511_130 Hb_005511_130 Hb_005357_110--Hb_005511_130 Hb_000032_410--Hb_000915_130 Hb_004545_080 Hb_004545_080 Hb_000032_410--Hb_004545_080 Hb_000032_410--Hb_005511_130 Hb_000032_410--Hb_029253_010 Hb_000032_410--Hb_004730_020 Hb_029253_010--Hb_003740_020 Hb_006925_050 Hb_006925_050 Hb_029253_010--Hb_006925_050 Hb_091318_010 Hb_091318_010 Hb_029253_010--Hb_091318_010 Hb_002374_270 Hb_002374_270 Hb_029253_010--Hb_002374_270 Hb_021409_070 Hb_021409_070 Hb_003740_020--Hb_021409_070 Hb_003740_020--Hb_005511_130 Hb_003740_020--Hb_004730_020 Hb_003740_020--Hb_000032_410 Hb_000915_130--Hb_005511_130 Hb_000042_110 Hb_000042_110 Hb_000915_130--Hb_000042_110 Hb_000260_490 Hb_000260_490 Hb_000915_130--Hb_000260_490 Hb_000915_130--Hb_004730_020 Hb_004730_020--Hb_005511_130 Hb_001579_300 Hb_001579_300 Hb_004730_020--Hb_001579_300 Hb_000527_080 Hb_000527_080 Hb_004730_020--Hb_000527_080 Hb_003687_080 Hb_003687_080 Hb_005511_130--Hb_003687_080 Hb_000984_220 Hb_000984_220 Hb_005511_130--Hb_000984_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
98.7046 257.361 539.449 551.009 57.059 77.019
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
86.3677 66.1144 52.499 137.433 306.461

CAGE analysis