Hb_005357_130

Information

Type -
Description -
Location Contig5357: 112687-114332
Sequence    

Annotation

kegg
ID rcu:RCOM_0905700
description hypothetical protein
nr
ID XP_010101480.1
description hypothetical protein L484_012905 [Morus notabilis]
swissprot
ID Q567Z6
description Cysteine-rich PDZ-binding protein OS=Danio rerio GN=cript PE=3 SV=1
trembl
ID M0U4T2
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47554: 112690-114344
cDNA
(Sanger)
(ID:Location)		 014_M07.ab1: 112714-114344 , 028_N18.ab1: 112690-114344 , 033_I20.ab1: 112736-114338

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005357_130 0.0 - - hypothetical protein L484_012905 [Morus notabilis]
2 Hb_000086_550 0.0522920866 - - Os02g0814700 [Oryza sativa Japonica Group]
3 Hb_009421_040 0.07378203 - - PREDICTED: eukaryotic initiation factor 4A [Jatropha curcas]
4 Hb_003623_050 0.074958256 - - conserved hypothetical protein [Ricinus communis]
5 Hb_012022_120 0.083098245 - - PREDICTED: protein N-methyltransferase NNT1 isoform X2 [Jatropha curcas]
6 Hb_006541_010 0.0860333456 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
7 Hb_006816_210 0.0864707739 - - PREDICTED: GTP-binding protein SAR1A [Nelumbo nucifera]
8 Hb_001421_060 0.0882736627 - - PREDICTED: tobamovirus multiplication protein 2B isoform X2 [Jatropha curcas]
9 Hb_000134_070 0.0883603045 - - 60S ribosomal protein L6, putative [Ricinus communis]
10 Hb_001505_020 0.0883904349 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Jatropha curcas]
11 Hb_004800_120 0.0891396981 - - PREDICTED: maf-like protein DDB_G0281937 isoform X1 [Jatropha curcas]
12 Hb_006816_530 0.0914661229 - - 60S ribosomal protein L18, putative [Ricinus communis]
13 Hb_010812_010 0.0923043819 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
14 Hb_000283_110 0.0926463907 - - PREDICTED: probable prefoldin subunit 4 isoform X2 [Jatropha curcas]
15 Hb_000505_140 0.0927711629 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Populus euphratica]
16 Hb_005181_030 0.0937267638 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
17 Hb_001279_360 0.0948211288 - - protein with unknown function [Ricinus communis]
18 Hb_004157_030 0.095556441 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
19 Hb_002713_070 0.0965847294 - - hypothetical protein POPTR_0002s21620g [Populus trichocarpa]
20 Hb_011161_050 0.0974252657 - - PREDICTED: uncharacterized protein LOC105127832 isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_005357_130 Hb_005357_130 Hb_000086_550 Hb_000086_550 Hb_005357_130--Hb_000086_550 Hb_009421_040 Hb_009421_040 Hb_005357_130--Hb_009421_040 Hb_003623_050 Hb_003623_050 Hb_005357_130--Hb_003623_050 Hb_012022_120 Hb_012022_120 Hb_005357_130--Hb_012022_120 Hb_006541_010 Hb_006541_010 Hb_005357_130--Hb_006541_010 Hb_006816_210 Hb_006816_210 Hb_005357_130--Hb_006816_210 Hb_000340_140 Hb_000340_140 Hb_000086_550--Hb_000340_140 Hb_004032_100 Hb_004032_100 Hb_000086_550--Hb_004032_100 Hb_000364_020 Hb_000364_020 Hb_000086_550--Hb_000364_020 Hb_006816_530 Hb_006816_530 Hb_000086_550--Hb_006816_530 Hb_011161_050 Hb_011161_050 Hb_000086_550--Hb_011161_050 Hb_002687_170 Hb_002687_170 Hb_009421_040--Hb_002687_170 Hb_009421_040--Hb_000086_550 Hb_001117_090 Hb_001117_090 Hb_009421_040--Hb_001117_090 Hb_009421_040--Hb_003623_050 Hb_005211_190 Hb_005211_190 Hb_009421_040--Hb_005211_190 Hb_000136_170 Hb_000136_170 Hb_003623_050--Hb_000136_170 Hb_026048_070 Hb_026048_070 Hb_003623_050--Hb_026048_070 Hb_003623_050--Hb_000086_550 Hb_011644_030 Hb_011644_030 Hb_003623_050--Hb_011644_030 Hb_001505_020 Hb_001505_020 Hb_003623_050--Hb_001505_020 Hb_000505_140 Hb_000505_140 Hb_012022_120--Hb_000505_140 Hb_002830_020 Hb_002830_020 Hb_012022_120--Hb_002830_020 Hb_032202_090 Hb_032202_090 Hb_012022_120--Hb_032202_090 Hb_000000_170 Hb_000000_170 Hb_012022_120--Hb_000000_170 Hb_000995_040 Hb_000995_040 Hb_012022_120--Hb_000995_040 Hb_005278_020 Hb_005278_020 Hb_012022_120--Hb_005278_020 Hb_033153_060 Hb_033153_060 Hb_006541_010--Hb_033153_060 Hb_001616_040 Hb_001616_040 Hb_006541_010--Hb_001616_040 Hb_004459_040 Hb_004459_040 Hb_006541_010--Hb_004459_040 Hb_007576_170 Hb_007576_170 Hb_006541_010--Hb_007576_170 Hb_006541_010--Hb_011644_030 Hb_007441_040 Hb_007441_040 Hb_006541_010--Hb_007441_040 Hb_015807_040 Hb_015807_040 Hb_006816_210--Hb_015807_040 Hb_017413_010 Hb_017413_010 Hb_006816_210--Hb_017413_010 Hb_000331_450 Hb_000331_450 Hb_006816_210--Hb_000331_450 Hb_006816_210--Hb_000086_550 Hb_006846_060 Hb_006846_060 Hb_006816_210--Hb_006846_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
68.9638 13.1447 34.8789 82.9559 67.5983 123.877
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
184.904 272.029 93.7974 76.9283 61.5989

CAGE analysis