Hb_005357_150

Information

Type -
Description -
Location Contig5357: 118256-119974
Sequence    

Annotation

kegg
ID rcu:RCOM_0905670
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002518527.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID O49558
description Pentatricopeptide repeat-containing protein At4g21170 OS=Arabidopsis thaliana GN=At4g21170 PE=3 SV=2
trembl
ID B9RXQ8
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0905670 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47556: 118548-118880
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005357_150 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_001981_090 0.0679106707 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
3 Hb_004108_050 0.0695769808 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
4 Hb_003057_120 0.0870536657 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
5 Hb_003151_050 0.0894713662 desease resistance Gene Name: MMR_HSR1 PREDICTED: uncharacterized protein LOC105639402 isoform X1 [Jatropha curcas]
6 Hb_003408_030 0.0905545661 - - PREDICTED: protein YIF1B [Jatropha curcas]
7 Hb_004800_160 0.0909822357 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
8 Hb_000085_310 0.0915233407 - - hypothetical protein JCGZ_00974 [Jatropha curcas]
9 Hb_000110_160 0.0925621382 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000861_040 0.0925767525 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Jatropha curcas]
11 Hb_002368_050 0.0983519585 - - conserved hypothetical protein [Ricinus communis]
12 Hb_011174_070 0.0985299712 - - PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like [Jatropha curcas]
13 Hb_010638_020 0.0985779721 - - PREDICTED: uncharacterized protein LOC105638189 isoform X3 [Jatropha curcas]
14 Hb_026988_020 0.0990799646 - - outward rectifying K+ channel [Hevea brasiliensis]
15 Hb_000029_030 0.0991860457 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
16 Hb_023386_080 0.1007589492 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
17 Hb_000173_170 0.1007722154 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
18 Hb_000072_280 0.101085236 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 2-like [Jatropha curcas]
19 Hb_034299_060 0.101688212 transcription factor TF Family: Orphans PREDICTED: two-component response regulator ARR5 [Jatropha curcas]
20 Hb_000983_100 0.1018001665 - - PREDICTED: AP-4 complex subunit mu isoform X1 [Vitis vinifera]

Gene co-expression network

sample Hb_005357_150 Hb_005357_150 Hb_001981_090 Hb_001981_090 Hb_005357_150--Hb_001981_090 Hb_004108_050 Hb_004108_050 Hb_005357_150--Hb_004108_050 Hb_003057_120 Hb_003057_120 Hb_005357_150--Hb_003057_120 Hb_003151_050 Hb_003151_050 Hb_005357_150--Hb_003151_050 Hb_003408_030 Hb_003408_030 Hb_005357_150--Hb_003408_030 Hb_004800_160 Hb_004800_160 Hb_005357_150--Hb_004800_160 Hb_001366_220 Hb_001366_220 Hb_001981_090--Hb_001366_220 Hb_000809_040 Hb_000809_040 Hb_001981_090--Hb_000809_040 Hb_000983_100 Hb_000983_100 Hb_001981_090--Hb_000983_100 Hb_002357_040 Hb_002357_040 Hb_001981_090--Hb_002357_040 Hb_000805_090 Hb_000805_090 Hb_001981_090--Hb_000805_090 Hb_000085_310 Hb_000085_310 Hb_004108_050--Hb_000085_310 Hb_026988_020 Hb_026988_020 Hb_004108_050--Hb_026988_020 Hb_027472_180 Hb_027472_180 Hb_004108_050--Hb_027472_180 Hb_023386_080 Hb_023386_080 Hb_004108_050--Hb_023386_080 Hb_004108_050--Hb_003151_050 Hb_011174_070 Hb_011174_070 Hb_003057_120--Hb_011174_070 Hb_000387_080 Hb_000387_080 Hb_003057_120--Hb_000387_080 Hb_003057_120--Hb_001366_220 Hb_003057_120--Hb_001981_090 Hb_003057_120--Hb_000805_090 Hb_000091_090 Hb_000091_090 Hb_003151_050--Hb_000091_090 Hb_003151_050--Hb_023386_080 Hb_021650_030 Hb_021650_030 Hb_003151_050--Hb_021650_030 Hb_000429_170 Hb_000429_170 Hb_003151_050--Hb_000429_170 Hb_000665_040 Hb_000665_040 Hb_003151_050--Hb_000665_040 Hb_000753_130 Hb_000753_130 Hb_003408_030--Hb_000753_130 Hb_003376_120 Hb_003376_120 Hb_003408_030--Hb_003376_120 Hb_000861_040 Hb_000861_040 Hb_003408_030--Hb_000861_040 Hb_002527_070 Hb_002527_070 Hb_003408_030--Hb_002527_070 Hb_007924_020 Hb_007924_020 Hb_003408_030--Hb_007924_020 Hb_000627_120 Hb_000627_120 Hb_003408_030--Hb_000627_120 Hb_004800_160--Hb_000861_040 Hb_000025_480 Hb_000025_480 Hb_004800_160--Hb_000025_480 Hb_010402_010 Hb_010402_010 Hb_004800_160--Hb_010402_010 Hb_000427_030 Hb_000427_030 Hb_004800_160--Hb_000427_030 Hb_004800_160--Hb_001981_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.913216 0.196158 0.16425 0.130482 0.942924 0.654534
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.07793 0.757095 1.41149 0.266678 0.125648

CAGE analysis