Hb_005357_180

Information

Type -
Description -
Location Contig5357: 139170-141583
Sequence    

Annotation

kegg
ID pop:POPTR_0011s00490g
description POPTRDRAFT_568202; hypothetical protein
nr
ID XP_002317207.2
description hypothetical protein POPTR_0011s00490g [Populus trichocarpa]
swissprot
ID Q9M0Y9
description CRIB domain-containing protein RIC10 OS=Arabidopsis thaliana GN=RIC10 PE=2 SV=1
trembl
ID B9HZL2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s00490g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47561: 138926-139616
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005357_180 0.0 - - hypothetical protein POPTR_0011s00490g [Populus trichocarpa]
2 Hb_024948_010 0.1682502883 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like [Populus euphratica]
3 Hb_000832_250 0.182376778 - - PREDICTED: protein UPSTREAM OF FLC-like [Jatropha curcas]
4 Hb_138229_010 0.2015389998 - - hypothetical protein JCGZ_05736 [Jatropha curcas]
5 Hb_001226_100 0.2033928789 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
6 Hb_006916_130 0.2147710677 - - PREDICTED: cytochrome P450 85A [Jatropha curcas]
7 Hb_164300_010 0.2156295812 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
8 Hb_010053_010 0.2165177193 - - hypothetical protein POPTR_0515s00220g [Populus trichocarpa]
9 Hb_000755_090 0.219701374 - - transferase, putative [Ricinus communis]
10 Hb_002217_060 0.2200056027 - - PREDICTED: polygalacturonase At1g48100 [Jatropha curcas]
11 Hb_004519_010 0.2211726392 - - PREDICTED: basic form of pathogenesis-related protein 1-like [Jatropha curcas]
12 Hb_012813_020 0.2218144999 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like isoform X2 [Jatropha curcas]
13 Hb_001019_210 0.2232755063 - - PREDICTED: protein kinase PINOID 2 [Gossypium raimondii]
14 Hb_023771_030 0.2304377679 - - unnamed protein product [Vitis vinifera]
15 Hb_007007_130 0.2310182454 transcription factor TF Family: MIKC MADS-box transcription factor 2 [Hevea brasiliensis]
16 Hb_079394_010 0.2314247352 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
17 Hb_000431_140 0.2330101021 - - PREDICTED: acetolactate synthase 1, chloroplastic-like [Vitis vinifera]
18 Hb_005333_210 0.2334522924 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Jatropha curcas]
19 Hb_000336_280 0.2343388602 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
20 Hb_001832_110 0.241519677 - - PREDICTED: receptor-like serine/threonine-protein kinase ALE2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005357_180 Hb_005357_180 Hb_024948_010 Hb_024948_010 Hb_005357_180--Hb_024948_010 Hb_000832_250 Hb_000832_250 Hb_005357_180--Hb_000832_250 Hb_138229_010 Hb_138229_010 Hb_005357_180--Hb_138229_010 Hb_001226_100 Hb_001226_100 Hb_005357_180--Hb_001226_100 Hb_006916_130 Hb_006916_130 Hb_005357_180--Hb_006916_130 Hb_164300_010 Hb_164300_010 Hb_005357_180--Hb_164300_010 Hb_010053_010 Hb_010053_010 Hb_024948_010--Hb_010053_010 Hb_000431_140 Hb_000431_140 Hb_024948_010--Hb_000431_140 Hb_000128_050 Hb_000128_050 Hb_024948_010--Hb_000128_050 Hb_024948_010--Hb_164300_010 Hb_024948_010--Hb_000832_250 Hb_000552_030 Hb_000552_030 Hb_024948_010--Hb_000552_030 Hb_004519_010 Hb_004519_010 Hb_000832_250--Hb_004519_010 Hb_001019_210 Hb_001019_210 Hb_000832_250--Hb_001019_210 Hb_079394_010 Hb_079394_010 Hb_000832_250--Hb_079394_010 Hb_000215_420 Hb_000215_420 Hb_000832_250--Hb_000215_420 Hb_000101_370 Hb_000101_370 Hb_000832_250--Hb_000101_370 Hb_000560_060 Hb_000560_060 Hb_138229_010--Hb_000560_060 Hb_004709_030 Hb_004709_030 Hb_138229_010--Hb_004709_030 Hb_005455_010 Hb_005455_010 Hb_138229_010--Hb_005455_010 Hb_138229_010--Hb_001226_100 Hb_002701_170 Hb_002701_170 Hb_138229_010--Hb_002701_170 Hb_001186_120 Hb_001186_120 Hb_138229_010--Hb_001186_120 Hb_000336_280 Hb_000336_280 Hb_001226_100--Hb_000336_280 Hb_000215_130 Hb_000215_130 Hb_001226_100--Hb_000215_130 Hb_001226_100--Hb_001186_120 Hb_001832_110 Hb_001832_110 Hb_001226_100--Hb_001832_110 Hb_001439_040 Hb_001439_040 Hb_001226_100--Hb_001439_040 Hb_005333_210 Hb_005333_210 Hb_001226_100--Hb_005333_210 Hb_023771_030 Hb_023771_030 Hb_006916_130--Hb_023771_030 Hb_012813_020 Hb_012813_020 Hb_006916_130--Hb_012813_020 Hb_002851_070 Hb_002851_070 Hb_006916_130--Hb_002851_070 Hb_005050_030 Hb_005050_030 Hb_006916_130--Hb_005050_030 Hb_002151_150 Hb_002151_150 Hb_006916_130--Hb_002151_150 Hb_017358_050 Hb_017358_050 Hb_006916_130--Hb_017358_050 Hb_164300_010--Hb_000101_370 Hb_002081_220 Hb_002081_220 Hb_164300_010--Hb_002081_220 Hb_164300_010--Hb_010053_010 Hb_000705_090 Hb_000705_090 Hb_164300_010--Hb_000705_090 Hb_164300_010--Hb_000215_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.029188 0 1.90886 0.435114 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.201457 0 0 1.66681 0.530164

CAGE analysis