Hb_005357_190

Information

Type -
Description -
Location Contig5357: 142309-144363
Sequence    

Annotation

kegg
ID rcu:RCOM_0806410
description Protein COBRA precursor, putative
nr
ID XP_002525742.1
description Protein COBRA precursor, putative [Ricinus communis]
swissprot
ID Q9LJU0
description COBRA-like protein 10 OS=Arabidopsis thaliana GN=COBL10 PE=2 SV=1
trembl
ID B9SIC3
description Protein COBRA, putative OS=Ricinus communis GN=RCOM_0806410 PE=4 SV=1
Gene Ontology
ID GO:0031225
description cobra-like protein 10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005357_190 0.0 - - Protein COBRA precursor, putative [Ricinus communis]
2 Hb_001217_030 0.0008631573 - - -
3 Hb_003462_130 0.020583636 - - -
4 Hb_003053_040 0.0377674909 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
5 Hb_003494_250 0.0431305666 - - -
6 Hb_011781_050 0.0830591501 - - -
7 Hb_002307_060 0.0963394016 - - -
8 Hb_000290_010 0.099301266 - - -
9 Hb_000089_230 0.1142412442 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
10 Hb_003384_050 0.1153218293 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_002805_080 0.1211950188 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
12 Hb_000105_090 0.1229452591 - - -
13 Hb_001631_120 0.1241902128 - - unnamed protein product [Vitis vinifera]
14 Hb_000705_310 0.125197254 - - hypothetical protein POPTR_0001s03390g [Populus trichocarpa]
15 Hb_105478_010 0.1357844487 - - PREDICTED: uncharacterized protein LOC105762101 [Gossypium raimondii]
16 Hb_008147_110 0.1570260456 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
17 Hb_004021_110 0.1902817756 - - -
18 Hb_001829_030 0.2023670513 - - PREDICTED: uncharacterized protein LOC105119087 [Populus euphratica]
19 Hb_001032_040 0.2142038739 - - PREDICTED: psbP-like protein 1, chloroplastic [Jatropha curcas]
20 Hb_101393_010 0.2455853745 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005357_190 Hb_005357_190 Hb_001217_030 Hb_001217_030 Hb_005357_190--Hb_001217_030 Hb_003462_130 Hb_003462_130 Hb_005357_190--Hb_003462_130 Hb_003053_040 Hb_003053_040 Hb_005357_190--Hb_003053_040 Hb_003494_250 Hb_003494_250 Hb_005357_190--Hb_003494_250 Hb_011781_050 Hb_011781_050 Hb_005357_190--Hb_011781_050 Hb_002307_060 Hb_002307_060 Hb_005357_190--Hb_002307_060 Hb_001217_030--Hb_003462_130 Hb_001217_030--Hb_003053_040 Hb_001217_030--Hb_003494_250 Hb_001217_030--Hb_011781_050 Hb_001217_030--Hb_002307_060 Hb_003462_130--Hb_003053_040 Hb_003462_130--Hb_003494_250 Hb_003462_130--Hb_011781_050 Hb_105478_010 Hb_105478_010 Hb_003462_130--Hb_105478_010 Hb_003053_040--Hb_003494_250 Hb_003053_040--Hb_105478_010 Hb_008147_110 Hb_008147_110 Hb_003053_040--Hb_008147_110 Hb_003494_250--Hb_011781_050 Hb_003494_250--Hb_002307_060 Hb_000290_010 Hb_000290_010 Hb_003494_250--Hb_000290_010 Hb_011781_050--Hb_002307_060 Hb_011781_050--Hb_000290_010 Hb_000089_230 Hb_000089_230 Hb_011781_050--Hb_000089_230 Hb_003384_050 Hb_003384_050 Hb_011781_050--Hb_003384_050 Hb_002805_080 Hb_002805_080 Hb_011781_050--Hb_002805_080 Hb_002307_060--Hb_000290_010 Hb_002307_060--Hb_000089_230 Hb_002307_060--Hb_003384_050 Hb_002307_060--Hb_002805_080 Hb_000105_090 Hb_000105_090 Hb_002307_060--Hb_000105_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0149622 0 0 0.00971048
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis