Hb_005357_260

Information

Type -
Description -
Location Contig5357: 198679-206515
Sequence    

Annotation

kegg
ID rcu:RCOM_0905380
description hypothetical protein
nr
ID XP_012091393.1
description PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
swissprot
ID Q0WPF2
description Polyadenylation and cleavage factor homolog 4 OS=Arabidopsis thaliana GN=PCFS4 PE=1 SV=1
trembl
ID A0A067JAF2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21252 PE=4 SV=1
Gene Ontology
ID GO:0044424
description polyadenylation and cleavage factor homolog 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47566: 198823-202315 , PASA_asmbl_47567: 201546-201719 , PASA_asmbl_47568: 202866-206338
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005357_260 0.0 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
2 Hb_011689_030 0.0456960885 - - 80 kD MCM3-associated protein, putative [Ricinus communis]
3 Hb_000176_100 0.0542458753 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
4 Hb_005402_040 0.0582043201 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
5 Hb_011202_020 0.0600246091 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 [Jatropha curcas]
6 Hb_000665_230 0.0632595506 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
7 Hb_003124_160 0.0632879023 - - dynamin, putative [Ricinus communis]
8 Hb_002174_030 0.0666760135 - - transcription elongation factor s-II, putative [Ricinus communis]
9 Hb_001235_230 0.0669811935 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
10 Hb_000099_040 0.0685062526 - - unnamed protein product [Coffea canephora]
11 Hb_001673_050 0.0686304027 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]
12 Hb_004884_150 0.0687973848 - - PREDICTED: ubiquitin-activating enzyme E1 1-like [Jatropha curcas]
13 Hb_000025_710 0.0688601151 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
14 Hb_000025_320 0.0733357906 - - PREDICTED: pentatricopeptide repeat-containing protein At4g28010 [Jatropha curcas]
15 Hb_000671_070 0.0734921944 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
16 Hb_140049_080 0.0742700323 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]
17 Hb_159558_010 0.0742787258 - - PREDICTED: uncharacterized protein LOC105635846 [Jatropha curcas]
18 Hb_000174_060 0.0749999486 - - zinc finger family protein [Populus trichocarpa]
19 Hb_000261_030 0.0765723882 - - PREDICTED: uncharacterized protein LOC105633147 [Jatropha curcas]
20 Hb_000395_070 0.0769897174 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005357_260 Hb_005357_260 Hb_011689_030 Hb_011689_030 Hb_005357_260--Hb_011689_030 Hb_000176_100 Hb_000176_100 Hb_005357_260--Hb_000176_100 Hb_005402_040 Hb_005402_040 Hb_005357_260--Hb_005402_040 Hb_011202_020 Hb_011202_020 Hb_005357_260--Hb_011202_020 Hb_000665_230 Hb_000665_230 Hb_005357_260--Hb_000665_230 Hb_003124_160 Hb_003124_160 Hb_005357_260--Hb_003124_160 Hb_011689_030--Hb_000665_230 Hb_011689_030--Hb_000176_100 Hb_001133_030 Hb_001133_030 Hb_011689_030--Hb_001133_030 Hb_009486_170 Hb_009486_170 Hb_011689_030--Hb_009486_170 Hb_000958_050 Hb_000958_050 Hb_011689_030--Hb_000958_050 Hb_000949_010 Hb_000949_010 Hb_000176_100--Hb_000949_010 Hb_001959_020 Hb_001959_020 Hb_000176_100--Hb_001959_020 Hb_003581_170 Hb_003581_170 Hb_000176_100--Hb_003581_170 Hb_000703_130 Hb_000703_130 Hb_000176_100--Hb_000703_130 Hb_027472_220 Hb_027472_220 Hb_005402_040--Hb_027472_220 Hb_005402_040--Hb_011202_020 Hb_005402_040--Hb_003124_160 Hb_000025_710 Hb_000025_710 Hb_005402_040--Hb_000025_710 Hb_000395_070 Hb_000395_070 Hb_005402_040--Hb_000395_070 Hb_001235_230 Hb_001235_230 Hb_011202_020--Hb_001235_230 Hb_011202_020--Hb_003124_160 Hb_000261_030 Hb_000261_030 Hb_011202_020--Hb_000261_030 Hb_011202_020--Hb_009486_170 Hb_003805_040 Hb_003805_040 Hb_000665_230--Hb_003805_040 Hb_000665_230--Hb_009486_170 Hb_000665_230--Hb_000176_100 Hb_000665_230--Hb_001133_030 Hb_002007_110 Hb_002007_110 Hb_000665_230--Hb_002007_110 Hb_000176_130 Hb_000176_130 Hb_003124_160--Hb_000176_130 Hb_004429_010 Hb_004429_010 Hb_003124_160--Hb_004429_010 Hb_002027_280 Hb_002027_280 Hb_003124_160--Hb_002027_280 Hb_003124_160--Hb_000261_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.27481 13.8451 7.24369 7.18564 10.2996 8.57357
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.60516 3.9509 6.17062 10.8649 10.2845

CAGE analysis