Hb_005365_030

Information

Type -
Description -
Location Contig5365: 44182-46198
Sequence    

Annotation

kegg
ID pop:POPTR_0002s24010g
description POPTRDRAFT_553127; hypothetical protein
nr
ID XP_002301767.1
description hypothetical protein POPTR_0002s24010g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GNH1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s24010g PE=4 SV=1
Gene Ontology
ID GO:0009055
description adrenodoxin-like mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47583: 44171-45066
cDNA
(Sanger)
(ID:Location)		 007_O11.ab1: 44171-44979 , 008_N08.ab1: 44171-44904 , 023_L13.ab1: 44264-44966 , 031_A12.ab1: 44264-45035 , 036_K21.ab1: 44264-44999

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005365_030 0.0 - - hypothetical protein POPTR_0002s24010g [Populus trichocarpa]
2 Hb_124953_020 0.0712184035 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
3 Hb_029388_020 0.0731438024 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002078_140 0.0769824328 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
5 Hb_002320_040 0.0785839368 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
6 Hb_001691_140 0.0791669313 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
7 Hb_027472_040 0.0791845102 - - SKP1 [Hevea brasiliensis]
8 Hb_000172_640 0.0808521409 - - hypothetical protein POPTR_0007s06250g [Populus trichocarpa]
9 Hb_024958_010 0.0826582609 - - PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Jatropha curcas]
10 Hb_004837_240 0.085020526 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]
11 Hb_000684_380 0.0851058805 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
12 Hb_007423_040 0.0867838342 - - PREDICTED: polyadenylate-binding protein 2-like isoform X1 [Jatropha curcas]
13 Hb_005054_350 0.0873363302 - - PREDICTED: 60S acidic ribosomal protein P0 [Vitis vinifera]
14 Hb_000610_050 0.0882410806 - - skp1, putative [Ricinus communis]
15 Hb_001215_040 0.0891337175 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003787_010 0.0919751464 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
17 Hb_000032_380 0.0920512662 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000062_070 0.0924508516 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
19 Hb_000905_060 0.0925357608 - - protein with unknown function [Ricinus communis]
20 Hb_000099_150 0.0932625653 - - PREDICTED: calcium-dependent protein kinase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_005365_030 Hb_005365_030 Hb_124953_020 Hb_124953_020 Hb_005365_030--Hb_124953_020 Hb_029388_020 Hb_029388_020 Hb_005365_030--Hb_029388_020 Hb_002078_140 Hb_002078_140 Hb_005365_030--Hb_002078_140 Hb_002320_040 Hb_002320_040 Hb_005365_030--Hb_002320_040 Hb_001691_140 Hb_001691_140 Hb_005365_030--Hb_001691_140 Hb_027472_040 Hb_027472_040 Hb_005365_030--Hb_027472_040 Hb_001016_150 Hb_001016_150 Hb_124953_020--Hb_001016_150 Hb_124953_020--Hb_002078_140 Hb_004800_060 Hb_004800_060 Hb_124953_020--Hb_004800_060 Hb_001863_430 Hb_001863_430 Hb_124953_020--Hb_001863_430 Hb_002192_010 Hb_002192_010 Hb_124953_020--Hb_002192_010 Hb_000684_380 Hb_000684_380 Hb_029388_020--Hb_000684_380 Hb_003125_200 Hb_003125_200 Hb_029388_020--Hb_003125_200 Hb_002995_020 Hb_002995_020 Hb_029388_020--Hb_002995_020 Hb_029388_020--Hb_001691_140 Hb_029388_020--Hb_027472_040 Hb_002078_140--Hb_001691_140 Hb_001341_150 Hb_001341_150 Hb_002078_140--Hb_001341_150 Hb_000136_260 Hb_000136_260 Hb_002078_140--Hb_000136_260 Hb_002078_140--Hb_001016_150 Hb_002078_140--Hb_001863_430 Hb_024958_010 Hb_024958_010 Hb_002320_040--Hb_024958_010 Hb_002320_040--Hb_000684_380 Hb_034552_030 Hb_034552_030 Hb_002320_040--Hb_034552_030 Hb_002936_010 Hb_002936_010 Hb_002320_040--Hb_002936_010 Hb_004837_240 Hb_004837_240 Hb_002320_040--Hb_004837_240 Hb_000062_070 Hb_000062_070 Hb_002320_040--Hb_000062_070 Hb_000099_150 Hb_000099_150 Hb_001691_140--Hb_000099_150 Hb_011671_100 Hb_011671_100 Hb_001691_140--Hb_011671_100 Hb_000217_030 Hb_000217_030 Hb_001691_140--Hb_000217_030 Hb_001691_140--Hb_001863_430 Hb_000610_050 Hb_000610_050 Hb_027472_040--Hb_000610_050 Hb_027472_040--Hb_003125_200 Hb_001504_020 Hb_001504_020 Hb_027472_040--Hb_001504_020 Hb_000457_100 Hb_000457_100 Hb_027472_040--Hb_000457_100 Hb_007576_080 Hb_007576_080 Hb_027472_040--Hb_007576_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.8956 23.1928 22.5168 22.8881 16.269 19.9034
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.8383 44.0635 18.8149 26.437 6.94209

CAGE analysis