Hb_005365_040

Information

Type -
Description -
Location Contig5365: 52128-52586
Sequence    

Annotation

kegg
ID egr:104456475
description calmodulin-like protein 3
nr
ID KDP45235.1
description hypothetical protein JCGZ_15100 [Jatropha curcas]
swissprot
ID Q9SRR7
description Calmodulin-like protein 3 OS=Arabidopsis thaliana GN=CML3 PE=2 SV=1
trembl
ID A0A067LKN1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15100 PE=4 SV=1
Gene Ontology
ID GO:0005777
description calmodulin-like protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005365_040 0.0 - - hypothetical protein JCGZ_15100 [Jatropha curcas]
2 Hb_001369_590 0.0477412907 transcription factor TF Family: MYB hypothetical protein POPTR_0015s14600g [Populus trichocarpa]
3 Hb_000051_150 0.0735932426 - - hypothetical protein CICLE_v10003316mg [Citrus clementina]
4 Hb_000187_100 0.0779941829 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
5 Hb_000160_260 0.0784133003 - - nutrient reservoir, putative [Ricinus communis]
6 Hb_002121_030 0.0811755253 - - Ribonuclease P protein subunit P38-related isoform 1 [Theobroma cacao]
7 Hb_000084_210 0.0843744618 - - hypothetical protein POPTR_0016s08050g [Populus trichocarpa]
8 Hb_000431_080 0.0862855127 - - PREDICTED: uncharacterized protein LOC105632547 [Jatropha curcas]
9 Hb_000152_650 0.0907906776 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
10 Hb_001123_340 0.0923794173 - - PREDICTED: uncharacterized protein LOC105123089 isoform X1 [Populus euphratica]
11 Hb_002499_050 0.0942062528 - - receptor protein kinase, putative [Ricinus communis]
12 Hb_054615_010 0.0969801673 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
13 Hb_001671_070 0.0984298444 - - kinase, putative [Ricinus communis]
14 Hb_104014_010 0.0992566746 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
15 Hb_089736_010 0.103091026 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 7 [Populus euphratica]
16 Hb_004003_020 0.10331607 - - unnamed protein product [Coffea canephora]
17 Hb_000735_190 0.1044441289 - - hypothetical protein POPTR_0006s19340g [Populus trichocarpa]
18 Hb_004223_120 0.1054219604 - - PREDICTED: protein SPA, chloroplastic [Jatropha curcas]
19 Hb_062773_010 0.1054990837 - - beta glucosidase [Manihot esculenta]
20 Hb_031862_190 0.1068671311 - - -

Gene co-expression network

sample Hb_005365_040 Hb_005365_040 Hb_001369_590 Hb_001369_590 Hb_005365_040--Hb_001369_590 Hb_000051_150 Hb_000051_150 Hb_005365_040--Hb_000051_150 Hb_000187_100 Hb_000187_100 Hb_005365_040--Hb_000187_100 Hb_000160_260 Hb_000160_260 Hb_005365_040--Hb_000160_260 Hb_002121_030 Hb_002121_030 Hb_005365_040--Hb_002121_030 Hb_000084_210 Hb_000084_210 Hb_005365_040--Hb_000084_210 Hb_001369_590--Hb_002121_030 Hb_002499_050 Hb_002499_050 Hb_001369_590--Hb_002499_050 Hb_006620_030 Hb_006620_030 Hb_001369_590--Hb_006620_030 Hb_000152_650 Hb_000152_650 Hb_001369_590--Hb_000152_650 Hb_001369_590--Hb_000084_210 Hb_000051_150--Hb_002121_030 Hb_000809_220 Hb_000809_220 Hb_000051_150--Hb_000809_220 Hb_104014_010 Hb_104014_010 Hb_000051_150--Hb_104014_010 Hb_010422_020 Hb_010422_020 Hb_000051_150--Hb_010422_020 Hb_000051_150--Hb_001369_590 Hb_004223_120 Hb_004223_120 Hb_000187_100--Hb_004223_120 Hb_031862_190 Hb_031862_190 Hb_000187_100--Hb_031862_190 Hb_003411_070 Hb_003411_070 Hb_000187_100--Hb_003411_070 Hb_003702_010 Hb_003702_010 Hb_000187_100--Hb_003702_010 Hb_000431_080 Hb_000431_080 Hb_000187_100--Hb_000431_080 Hb_000735_190 Hb_000735_190 Hb_000160_260--Hb_000735_190 Hb_001671_070 Hb_001671_070 Hb_000160_260--Hb_001671_070 Hb_006586_060 Hb_006586_060 Hb_000160_260--Hb_006586_060 Hb_000751_010 Hb_000751_010 Hb_000160_260--Hb_000751_010 Hb_102129_040 Hb_102129_040 Hb_000160_260--Hb_102129_040 Hb_000160_260--Hb_031862_190 Hb_002121_030--Hb_000809_220 Hb_002121_030--Hb_000152_650 Hb_054615_010 Hb_054615_010 Hb_002121_030--Hb_054615_010 Hb_002561_040 Hb_002561_040 Hb_000084_210--Hb_002561_040 Hb_000084_210--Hb_002499_050 Hb_004627_050 Hb_004627_050 Hb_000084_210--Hb_004627_050 Hb_002259_020 Hb_002259_020 Hb_000084_210--Hb_002259_020 Hb_011512_100 Hb_011512_100 Hb_000084_210--Hb_011512_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.31856 29.9602 5.31848 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 8.2525

CAGE analysis