Hb_005367_010

Information

Type -
Description -
Location Contig5367: 24578-25934
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47585: 24570-40558 , PASA_asmbl_47586: 25075-25236
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005367_010 0.0 - - -
2 Hb_001377_180 0.1208771337 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1 [Jatropha curcas]
3 Hb_152554_010 0.1247253041 - - hypothetical protein B456_008G095800, partial [Gossypium raimondii]
4 Hb_136731_010 0.1265722254 - - PREDICTED: uncharacterized protein LOC105628378 isoform X4 [Jatropha curcas]
5 Hb_007441_270 0.1267899739 - - PREDICTED: 40S ribosomal protein S11 [Jatropha curcas]
6 Hb_003861_040 0.1344636595 - - hypothetical protein JCGZ_16325 [Jatropha curcas]
7 Hb_000176_120 0.1360482284 - - seryl-tRNA synthetase, putative [Ricinus communis]
8 Hb_000001_040 0.1368606378 - - unnamed protein product [Coffea canephora]
9 Hb_005714_130 0.1402691924 transcription factor TF Family: C2H2 unknown [Populus trichocarpa x Populus deltoides]
10 Hb_000155_180 0.1405201137 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
11 Hb_002687_080 0.1411208998 - - hypothetical protein JCGZ_06535 [Jatropha curcas]
12 Hb_010504_030 0.1420419196 - - calmodulin homolog {EST} [Brassica napus, Naehan, root, Peptide Partial, 53 aa]
13 Hb_004223_220 0.1425266629 - - PREDICTED: uncharacterized protein LOC105635366 isoform X1 [Jatropha curcas]
14 Hb_000812_040 0.1425882761 - - zinc finger family protein [Populus trichocarpa]
15 Hb_000080_060 0.1427219582 - - RNA polymerase I, II and III subunit RPB8, partial [Manihot esculenta]
16 Hb_007188_020 0.1439650152 - - hypothetical protein PRUPE_ppb010436mg [Prunus persica]
17 Hb_116596_010 0.1449739202 - - PREDICTED: probable receptor-like protein kinase At5g47070-like isoform X1 [Citrus sinensis]
18 Hb_076875_020 0.1462923522 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
19 Hb_005054_070 0.1481392977 - - unnamed protein product [Vitis vinifera]
20 Hb_093666_020 0.1490328377 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]

Gene co-expression network

sample Hb_005367_010 Hb_005367_010 Hb_001377_180 Hb_001377_180 Hb_005367_010--Hb_001377_180 Hb_152554_010 Hb_152554_010 Hb_005367_010--Hb_152554_010 Hb_136731_010 Hb_136731_010 Hb_005367_010--Hb_136731_010 Hb_007441_270 Hb_007441_270 Hb_005367_010--Hb_007441_270 Hb_003861_040 Hb_003861_040 Hb_005367_010--Hb_003861_040 Hb_000176_120 Hb_000176_120 Hb_005367_010--Hb_000176_120 Hb_000155_180 Hb_000155_180 Hb_001377_180--Hb_000155_180 Hb_001377_180--Hb_136731_010 Hb_000771_100 Hb_000771_100 Hb_001377_180--Hb_000771_100 Hb_002374_020 Hb_002374_020 Hb_001377_180--Hb_002374_020 Hb_003994_270 Hb_003994_270 Hb_001377_180--Hb_003994_270 Hb_003011_040 Hb_003011_040 Hb_001377_180--Hb_003011_040 Hb_007188_020 Hb_007188_020 Hb_152554_010--Hb_007188_020 Hb_006487_060 Hb_006487_060 Hb_152554_010--Hb_006487_060 Hb_000812_040 Hb_000812_040 Hb_152554_010--Hb_000812_040 Hb_152554_010--Hb_003861_040 Hb_152554_010--Hb_001377_180 Hb_152554_010--Hb_000176_120 Hb_005054_070 Hb_005054_070 Hb_136731_010--Hb_005054_070 Hb_136731_010--Hb_000155_180 Hb_136731_010--Hb_000812_040 Hb_006502_080 Hb_006502_080 Hb_136731_010--Hb_006502_080 Hb_000003_730 Hb_000003_730 Hb_007441_270--Hb_000003_730 Hb_000684_230 Hb_000684_230 Hb_007441_270--Hb_000684_230 Hb_067776_010 Hb_067776_010 Hb_007441_270--Hb_067776_010 Hb_001269_320 Hb_001269_320 Hb_007441_270--Hb_001269_320 Hb_004502_020 Hb_004502_020 Hb_007441_270--Hb_004502_020 Hb_000500_060 Hb_000500_060 Hb_007441_270--Hb_000500_060 Hb_000162_260 Hb_000162_260 Hb_003861_040--Hb_000162_260 Hb_003861_040--Hb_007441_270 Hb_098852_010 Hb_098852_010 Hb_003861_040--Hb_098852_010 Hb_003861_040--Hb_000812_040 Hb_000176_120--Hb_005054_070 Hb_000176_120--Hb_006487_060 Hb_000001_040 Hb_000001_040 Hb_000176_120--Hb_000001_040 Hb_010504_030 Hb_010504_030 Hb_000176_120--Hb_010504_030 Hb_000176_120--Hb_136731_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.2315 15.9235 18.9414 94.3772 59.5748 181.085
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.8219 113.58 24.3686 30.6796 5.83258

CAGE analysis