Hb_005368_030

Information

Type -
Description -
Location Contig5368: 23444-24354
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005368_030 0.0 - - -
2 Hb_182507_010 0.0588850066 - - -
3 Hb_001660_140 0.0622437936 - - -
4 Hb_005263_010 0.0677829469 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Nicotiana sylvestris]
5 Hb_013040_010 0.0841272551 - - hypothetical protein POPTR_0009s09690g [Populus trichocarpa]
6 Hb_000270_540 0.1213545405 - - hypothetical protein JCGZ_11527 [Jatropha curcas]
7 Hb_004907_030 0.1434620777 - - hypothetical protein POPTR_0012s032802g, partial [Populus trichocarpa]
8 Hb_009803_010 0.1589605216 - - hypothetical protein JCGZ_08257 [Jatropha curcas]
9 Hb_033312_110 0.1676122915 - - -
10 Hb_000025_220 0.171249402 - - hypothetical protein POPTR_0001s28080g [Populus trichocarpa]
11 Hb_009119_010 0.1939336784 - - -
12 Hb_003641_010 0.2086342513 - - Pectinesterase-3 precursor, putative [Ricinus communis]
13 Hb_000300_140 0.2151978784 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
14 Hb_068804_060 0.2208841751 - - PREDICTED: ABC transporter G family member 17-like [Jatropha curcas]
15 Hb_007290_020 0.2210292949 - - PREDICTED: subtilisin-like protease SBT4.14 [Jatropha curcas]
16 Hb_000025_080 0.2226763789 - - -
17 Hb_007356_010 0.2262484719 - - CTV.19 [Citrus trifoliata]
18 Hb_163132_010 0.2303825254 - - -
19 Hb_000010_040 0.2382840034 - - PREDICTED: probable 1-aminocyclopropane-1-carboxylate deaminase-like isoform X2 [Citrus sinensis]
20 Hb_005723_070 0.2435082689 - - hypothetical protein CISIN_1g011514mg [Citrus sinensis]

Gene co-expression network

sample Hb_005368_030 Hb_005368_030 Hb_182507_010 Hb_182507_010 Hb_005368_030--Hb_182507_010 Hb_001660_140 Hb_001660_140 Hb_005368_030--Hb_001660_140 Hb_005263_010 Hb_005263_010 Hb_005368_030--Hb_005263_010 Hb_013040_010 Hb_013040_010 Hb_005368_030--Hb_013040_010 Hb_000270_540 Hb_000270_540 Hb_005368_030--Hb_000270_540 Hb_004907_030 Hb_004907_030 Hb_005368_030--Hb_004907_030 Hb_182507_010--Hb_001660_140 Hb_182507_010--Hb_013040_010 Hb_182507_010--Hb_004907_030 Hb_182507_010--Hb_000270_540 Hb_033312_110 Hb_033312_110 Hb_182507_010--Hb_033312_110 Hb_001660_140--Hb_013040_010 Hb_001660_140--Hb_004907_030 Hb_001660_140--Hb_000270_540 Hb_001660_140--Hb_033312_110 Hb_000025_220 Hb_000025_220 Hb_005263_010--Hb_000025_220 Hb_005263_010--Hb_182507_010 Hb_005263_010--Hb_001660_140 Hb_009803_010 Hb_009803_010 Hb_005263_010--Hb_009803_010 Hb_005263_010--Hb_013040_010 Hb_013040_010--Hb_004907_030 Hb_013040_010--Hb_033312_110 Hb_013040_010--Hb_000270_540 Hb_000270_540--Hb_004907_030 Hb_000270_540--Hb_033312_110 Hb_004907_030--Hb_033312_110 Hb_000300_140 Hb_000300_140 Hb_004907_030--Hb_000300_140 Hb_068804_060 Hb_068804_060 Hb_004907_030--Hb_068804_060 Hb_007290_020 Hb_007290_020 Hb_004907_030--Hb_007290_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.175413 0 0.0813628
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis