Hb_005375_030

Information

Type -
Description -
Location Contig5375: 40480-42554
Sequence    

Annotation

kegg
ID gmx:102665293
description endoribonuclease Dicer homolog 1-like
nr
ID AAQ54511.1
description DEAD/DEAH box helicase factory [Malus domestica]
swissprot
ID -
description -
trembl
ID Q6V8T4
description DEAD/DEAH box helicase factory (Fragment) OS=Malus domestica PE=2 SV=1
Gene Ontology
ID GO:0003723
description endoribonuclease dicer homolog 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005375_030 0.0 - - DEAD/DEAH box helicase factory [Malus domestica]
2 Hb_002798_040 0.0899867801 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
3 Hb_004452_100 0.0907098232 - - PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
4 Hb_004046_010 0.1007081538 - - PREDICTED: uncharacterized protein LOC105632478 isoform X2 [Jatropha curcas]
5 Hb_007364_010 0.1014470218 - - PREDICTED: general transcription factor 3C polypeptide 3-like isoform X1 [Jatropha curcas]
6 Hb_009393_050 0.1022599498 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
7 Hb_001789_210 0.1045749283 - - PREDICTED: methyltransferase-like protein 1 isoform X2 [Jatropha curcas]
8 Hb_003728_030 0.1045789712 - - o-sialoglycoprotein endopeptidase, putative [Ricinus communis]
9 Hb_000556_020 0.1048900495 - - PREDICTED: terminal uridylyltransferase 7 [Jatropha curcas]
10 Hb_000413_180 0.1069443659 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
11 Hb_005977_090 0.1081132164 - - PREDICTED: F-box/kelch-repeat protein At1g16250 [Jatropha curcas]
12 Hb_011318_010 0.1093935246 - - PREDICTED: peroxisome biogenesis protein 5 [Jatropha curcas]
13 Hb_001663_030 0.1095057977 - - PREDICTED: peroxisomal membrane protein 13 [Jatropha curcas]
14 Hb_000703_080 0.1096022904 - - guanine nucleotide exchange factor P532, putative [Ricinus communis]
15 Hb_000808_180 0.1128461229 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09190 [Jatropha curcas]
16 Hb_016657_010 0.1131367394 - - PREDICTED: peroxisome biogenesis protein 5 [Jatropha curcas]
17 Hb_005396_130 0.1137663949 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
18 Hb_000134_090 0.1155358752 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
19 Hb_000661_050 0.1155696498 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
20 Hb_004934_090 0.1162247803 - - hypothetical protein JCGZ_08073 [Jatropha curcas]

Gene co-expression network

sample Hb_005375_030 Hb_005375_030 Hb_002798_040 Hb_002798_040 Hb_005375_030--Hb_002798_040 Hb_004452_100 Hb_004452_100 Hb_005375_030--Hb_004452_100 Hb_004046_010 Hb_004046_010 Hb_005375_030--Hb_004046_010 Hb_007364_010 Hb_007364_010 Hb_005375_030--Hb_007364_010 Hb_009393_050 Hb_009393_050 Hb_005375_030--Hb_009393_050 Hb_001789_210 Hb_001789_210 Hb_005375_030--Hb_001789_210 Hb_002798_040--Hb_004452_100 Hb_000100_070 Hb_000100_070 Hb_002798_040--Hb_000100_070 Hb_001366_040 Hb_001366_040 Hb_002798_040--Hb_001366_040 Hb_000244_250 Hb_000244_250 Hb_002798_040--Hb_000244_250 Hb_011318_010 Hb_011318_010 Hb_002798_040--Hb_011318_010 Hb_010931_080 Hb_010931_080 Hb_002798_040--Hb_010931_080 Hb_004452_100--Hb_001366_040 Hb_004452_100--Hb_011318_010 Hb_004452_100--Hb_000244_250 Hb_002039_010 Hb_002039_010 Hb_004452_100--Hb_002039_010 Hb_000184_110 Hb_000184_110 Hb_004452_100--Hb_000184_110 Hb_005062_070 Hb_005062_070 Hb_004046_010--Hb_005062_070 Hb_015306_020 Hb_015306_020 Hb_004046_010--Hb_015306_020 Hb_002890_340 Hb_002890_340 Hb_004046_010--Hb_002890_340 Hb_002477_160 Hb_002477_160 Hb_004046_010--Hb_002477_160 Hb_011918_080 Hb_011918_080 Hb_004046_010--Hb_011918_080 Hb_000446_090 Hb_000446_090 Hb_004046_010--Hb_000446_090 Hb_000977_180 Hb_000977_180 Hb_007364_010--Hb_000977_180 Hb_007364_010--Hb_001789_210 Hb_004934_090 Hb_004934_090 Hb_007364_010--Hb_004934_090 Hb_000703_080 Hb_000703_080 Hb_007364_010--Hb_000703_080 Hb_010710_110 Hb_010710_110 Hb_007364_010--Hb_010710_110 Hb_025557_010 Hb_025557_010 Hb_007364_010--Hb_025557_010 Hb_009393_050--Hb_004934_090 Hb_009393_080 Hb_009393_080 Hb_009393_050--Hb_009393_080 Hb_000284_210 Hb_000284_210 Hb_009393_050--Hb_000284_210 Hb_001866_110 Hb_001866_110 Hb_009393_050--Hb_001866_110 Hb_009393_050--Hb_007364_010 Hb_000429_120 Hb_000429_120 Hb_009393_050--Hb_000429_120 Hb_001789_210--Hb_002798_040 Hb_001638_250 Hb_001638_250 Hb_001789_210--Hb_001638_250 Hb_001789_210--Hb_004934_090 Hb_001736_040 Hb_001736_040 Hb_001789_210--Hb_001736_040 Hb_006649_060 Hb_006649_060 Hb_001789_210--Hb_006649_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.57046 2.40366 0.300473 0.79123 3.705 4.89922
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.90796 1.71331 3.70968 1.81943 1.78454

CAGE analysis