Hb_005375_090

Information

Type -
Description -
Location Contig5375: 79970-81328
Sequence    

Annotation

kegg
ID pxb:103956348
description protein CURVATURE THYLAKOID 1B, chloroplastic
nr
ID XP_012083090.1
description PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
swissprot
ID Q8LCA1
description Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana GN=CURT1B PE=1 SV=2
trembl
ID A0A067K802
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14176 PE=4 SV=1
Gene Ontology
ID GO:0009508
description protein curvature thylakoid chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47624: 79902-81462
cDNA
(Sanger)
(ID:Location)		 004_A05.ab1: 80061-81462 , 011_O18.ab1: 79944-81328 , 021_G05.ab1: 79930-80186

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005375_090 0.0 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
2 Hb_003747_090 0.0197979599 - - PREDICTED: glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic isoform X2 [Jatropha curcas]
3 Hb_002785_040 0.0356770946 - - sedoheptulose-1,7-bisphosphatase, chloroplast, putative [Ricinus communis]
4 Hb_013405_110 0.0386114486 - - multidrug resistance pump, putative [Ricinus communis]
5 Hb_002890_170 0.0475502087 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
6 Hb_004129_170 0.0479635893 - - PREDICTED: protein trichome birefringence-like 43 [Jatropha curcas]
7 Hb_082402_020 0.048827541 - - PREDICTED: aluminum-activated malate transporter 8-like [Jatropha curcas]
8 Hb_086022_020 0.0492738839 - - RecName: Full=Ribulose bisphosphate carboxylase small chain, chloroplastic; Short=RuBisCO small subunit; Flags: Precursor [Hevea brasiliensis]
9 Hb_002374_480 0.0517390951 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
10 Hb_002400_200 0.0525348568 - - 14 kDa proline-rich protein DC2.15 precursor, putative [Ricinus communis]
11 Hb_000948_240 0.0528024846 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002592_040 0.0584871931 - - ACC oxidase 3 [Hevea brasiliensis]
13 Hb_027380_080 0.0596719729 - - hypothetical protein JCGZ_04649 [Jatropha curcas]
14 Hb_001006_160 0.0615984342 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
15 Hb_000251_160 0.0618373726 - - chlorophyll A/B binding protein, putative [Ricinus communis]
16 Hb_107748_010 0.0621602186 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
17 Hb_001862_040 0.0641508376 - - heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]
18 Hb_001936_100 0.0684858337 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000334_290 0.069216933 - - monovalent cation:proton antiporter, putative [Ricinus communis]
20 Hb_153106_010 0.0697655378 - - hypothetical protein JCGZ_01308 [Jatropha curcas]

Gene co-expression network

sample Hb_005375_090 Hb_005375_090 Hb_003747_090 Hb_003747_090 Hb_005375_090--Hb_003747_090 Hb_002785_040 Hb_002785_040 Hb_005375_090--Hb_002785_040 Hb_013405_110 Hb_013405_110 Hb_005375_090--Hb_013405_110 Hb_002890_170 Hb_002890_170 Hb_005375_090--Hb_002890_170 Hb_004129_170 Hb_004129_170 Hb_005375_090--Hb_004129_170 Hb_082402_020 Hb_082402_020 Hb_005375_090--Hb_082402_020 Hb_003747_090--Hb_002785_040 Hb_003747_090--Hb_013405_110 Hb_003747_090--Hb_004129_170 Hb_003747_090--Hb_002890_170 Hb_003747_090--Hb_082402_020 Hb_002785_040--Hb_013405_110 Hb_086022_020 Hb_086022_020 Hb_002785_040--Hb_086022_020 Hb_002785_040--Hb_004129_170 Hb_000320_370 Hb_000320_370 Hb_002785_040--Hb_000320_370 Hb_002400_200 Hb_002400_200 Hb_013405_110--Hb_002400_200 Hb_000703_340 Hb_000703_340 Hb_013405_110--Hb_000703_340 Hb_002592_040 Hb_002592_040 Hb_013405_110--Hb_002592_040 Hb_002890_170--Hb_082402_020 Hb_002890_170--Hb_002400_200 Hb_002890_170--Hb_004129_170 Hb_153106_010 Hb_153106_010 Hb_002890_170--Hb_153106_010 Hb_000251_160 Hb_000251_160 Hb_004129_170--Hb_000251_160 Hb_002374_480 Hb_002374_480 Hb_004129_170--Hb_002374_480 Hb_004129_170--Hb_086022_020 Hb_004129_170--Hb_153106_010 Hb_180007_010 Hb_180007_010 Hb_004129_170--Hb_180007_010 Hb_001862_040 Hb_001862_040 Hb_082402_020--Hb_001862_040 Hb_082402_020--Hb_002400_200 Hb_000334_290 Hb_000334_290 Hb_082402_020--Hb_000334_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.01024 256.767 82.0425 0 0.027055
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.12649 0.442859 0 0.0448638 529.333

CAGE analysis