Hb_005381_010

Information

Type transcription factor
Description TF Family: bHLH
Location Contig5381: 58842-63676
Sequence    

Annotation

kegg
ID pmum:103323643
description transcription factor bHLH35
nr
ID XP_012066631.1
description PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]
swissprot
ID Q2HIV9
description Transcription factor bHLH35 OS=Arabidopsis thaliana GN=BHLH35 PE=2 SV=1
trembl
ID A0A067LEK7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02482 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor bhlh35

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47711: 58963-63668 , PASA_asmbl_47712: 58865-63536
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005381_010 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH35 isoform X1 [Jatropha curcas]
2 Hb_000069_530 0.0500225962 transcription factor TF Family: WRKY hypothetical protein POPTR_0014s09190g [Populus trichocarpa]
3 Hb_121540_010 0.0700672424 - - PREDICTED: UDP-glycosyltransferase 88A1-like [Jatropha curcas]
4 Hb_003060_150 0.0720660898 - - UDP-glucosyltransferase, putative [Ricinus communis]
5 Hb_182167_010 0.0795101025 - - hypothetical protein PHAVU_001G0486001g, partial [Phaseolus vulgaris]
6 Hb_001660_080 0.0858192506 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
7 Hb_077694_010 0.0927281165 - - uncharacterized protein LOC100305624 [Glycine max]
8 Hb_004612_020 0.1078972197 - - PREDICTED: tetraspanin-8-like [Populus euphratica]
9 Hb_006615_060 0.1080595685 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001153_250 0.1105002987 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1A-like [Jatropha curcas]
11 Hb_000172_410 0.1105745662 - - metal ion binding protein, putative [Ricinus communis]
12 Hb_012496_020 0.1127539153 - - receptor serine/threonine kinase, putative [Ricinus communis]
13 Hb_009252_090 0.1188096442 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
14 Hb_002400_020 0.1241850348 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
15 Hb_120011_010 0.1249376216 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
16 Hb_000592_070 0.1270221125 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
17 Hb_028486_010 0.1309948011 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 90-like [Jatropha curcas]
18 Hb_001369_670 0.1310277372 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
19 Hb_012022_020 0.1317270862 transcription factor TF Family: G2-like hypothetical protein POPTR_0006s10190g [Populus trichocarpa]
20 Hb_017693_040 0.1330036671 - - tyrosine kinase family protein [Medicago truncatula]

Gene co-expression network

sample Hb_005381_010 Hb_005381_010 Hb_000069_530 Hb_000069_530 Hb_005381_010--Hb_000069_530 Hb_121540_010 Hb_121540_010 Hb_005381_010--Hb_121540_010 Hb_003060_150 Hb_003060_150 Hb_005381_010--Hb_003060_150 Hb_182167_010 Hb_182167_010 Hb_005381_010--Hb_182167_010 Hb_001660_080 Hb_001660_080 Hb_005381_010--Hb_001660_080 Hb_077694_010 Hb_077694_010 Hb_005381_010--Hb_077694_010 Hb_000069_530--Hb_003060_150 Hb_000069_530--Hb_121540_010 Hb_000069_530--Hb_077694_010 Hb_000592_070 Hb_000592_070 Hb_000069_530--Hb_000592_070 Hb_000069_530--Hb_001660_080 Hb_121540_010--Hb_003060_150 Hb_028486_010 Hb_028486_010 Hb_121540_010--Hb_028486_010 Hb_121540_010--Hb_077694_010 Hb_121540_010--Hb_001660_080 Hb_003060_150--Hb_028486_010 Hb_003060_150--Hb_001660_080 Hb_009252_090 Hb_009252_090 Hb_003060_150--Hb_009252_090 Hb_012496_020 Hb_012496_020 Hb_182167_010--Hb_012496_020 Hb_182167_010--Hb_003060_150 Hb_182167_010--Hb_000069_530 Hb_182167_010--Hb_121540_010 Hb_001153_250 Hb_001153_250 Hb_182167_010--Hb_001153_250 Hb_000836_420 Hb_000836_420 Hb_001660_080--Hb_000836_420 Hb_000035_140 Hb_000035_140 Hb_001660_080--Hb_000035_140 Hb_189208_060 Hb_189208_060 Hb_001660_080--Hb_189208_060 Hb_017693_040 Hb_017693_040 Hb_077694_010--Hb_017693_040 Hb_077694_010--Hb_001660_080 Hb_120011_010 Hb_120011_010 Hb_077694_010--Hb_120011_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.425265 257.738 306.84 98.1268 0.17221 0.0575423
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0463469 0 0 3.90768 31.1023

CAGE analysis