Hb_005389_010

Information

Type -
Description -
Location Contig5389: 27992-32652
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007224141.1
description hypothetical protein PRUPE_ppa016115mg [Prunus persica]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID M5Y103
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016115mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005389_010 0.0 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
2 Hb_189237_010 0.0776105496 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
3 Hb_144951_010 0.1408212147 - - putative reverse transcriptase [Oryza sativa Japonica Group]
4 Hb_004108_010 0.1936041001 - - -
5 Hb_000014_140 0.2113714697 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
6 Hb_084611_010 0.2243518855 - - PREDICTED: uncharacterized protein LOC104249812 [Nicotiana sylvestris]
7 Hb_033623_010 0.2289133651 - - -
8 Hb_126907_010 0.2390943662 - - -
9 Hb_050495_010 0.2427908929 - - heat-shock protein, putative [Ricinus communis]
10 Hb_000359_110 0.2481119392 transcription factor TF Family: NAC NAC domain-containing protein 42 [Theobroma cacao]
11 Hb_000117_170 0.2525369286 - - PREDICTED: uncharacterized protein LOC104088736 isoform X2 [Nicotiana tomentosiformis]
12 Hb_000849_110 0.2553804028 - - PREDICTED: uncharacterized protein LOC105179663 [Sesamum indicum]
13 Hb_041177_010 0.2565053939 - - PREDICTED: MLP-like protein 34 [Vitis vinifera]
14 Hb_001250_110 0.2676737892 transcription factor TF Family: HB hypothetical protein POPTR_0010s05340g [Populus trichocarpa]
15 Hb_007292_030 0.2742313423 - - conserved hypothetical protein [Ricinus communis]
16 Hb_102408_010 0.27733794 - - hypothetical protein JCGZ_27060 [Jatropha curcas]
17 Hb_003849_230 0.2794669369 - - PREDICTED: NEP1-interacting protein 2-like [Jatropha curcas]
18 Hb_000575_130 0.2796019197 - - PREDICTED: putative G-type lectin S-receptor-like serine/threonine-protein kinase At1g61610 [Populus euphratica]
19 Hb_000563_450 0.2800787739 - - PREDICTED: uncharacterized protein LOC103419743 [Malus domestica]
20 Hb_000281_170 0.2816295098 - - polyprotein [Citrus endogenous pararetrovirus]

Gene co-expression network

sample Hb_005389_010 Hb_005389_010 Hb_189237_010 Hb_189237_010 Hb_005389_010--Hb_189237_010 Hb_144951_010 Hb_144951_010 Hb_005389_010--Hb_144951_010 Hb_004108_010 Hb_004108_010 Hb_005389_010--Hb_004108_010 Hb_000014_140 Hb_000014_140 Hb_005389_010--Hb_000014_140 Hb_084611_010 Hb_084611_010 Hb_005389_010--Hb_084611_010 Hb_033623_010 Hb_033623_010 Hb_005389_010--Hb_033623_010 Hb_189237_010--Hb_144951_010 Hb_189237_010--Hb_004108_010 Hb_189237_010--Hb_033623_010 Hb_041177_010 Hb_041177_010 Hb_189237_010--Hb_041177_010 Hb_050495_010 Hb_050495_010 Hb_189237_010--Hb_050495_010 Hb_144951_010--Hb_004108_010 Hb_144951_010--Hb_033623_010 Hb_144951_010--Hb_050495_010 Hb_000359_110 Hb_000359_110 Hb_144951_010--Hb_000359_110 Hb_004108_010--Hb_033623_010 Hb_093432_020 Hb_093432_020 Hb_004108_010--Hb_093432_020 Hb_002928_070 Hb_002928_070 Hb_004108_010--Hb_002928_070 Hb_008453_070 Hb_008453_070 Hb_000014_140--Hb_008453_070 Hb_000014_140--Hb_189237_010 Hb_001250_120 Hb_001250_120 Hb_000014_140--Hb_001250_120 Hb_000014_140--Hb_050495_010 Hb_001250_110 Hb_001250_110 Hb_000014_140--Hb_001250_110 Hb_126907_010 Hb_126907_010 Hb_084611_010--Hb_126907_010 Hb_000117_170 Hb_000117_170 Hb_084611_010--Hb_000117_170 Hb_000849_110 Hb_000849_110 Hb_084611_010--Hb_000849_110 Hb_000281_170 Hb_000281_170 Hb_084611_010--Hb_000281_170 Hb_046117_040 Hb_046117_040 Hb_084611_010--Hb_046117_040 Hb_002774_130 Hb_002774_130 Hb_084611_010--Hb_002774_130 Hb_033623_010--Hb_041177_010 Hb_000684_340 Hb_000684_340 Hb_033623_010--Hb_000684_340 Hb_001081_040 Hb_001081_040 Hb_033623_010--Hb_001081_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.039249 0 0 0.00459376 0.00801256
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00324071 0

CAGE analysis