Hb_005389_030

Information

Type -
Description -
Location Contig5389: 60188-63687
Sequence    

Annotation

kegg
ID gmx:100807419
description uncharacterized LOC100807419
nr
ID CAN83684.1
description hypothetical protein VITISV_023348 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5BXH3
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023348 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005389_030 0.0 - - hypothetical protein VITISV_023348 [Vitis vinifera]
2 Hb_005357_040 0.02581913 - - gibberellin 20-oxidase, putative [Ricinus communis]
3 Hb_000028_450 0.0319840182 - - PREDICTED: monoglyceride lipase-like [Jatropha curcas]
4 Hb_100953_010 0.0391227671 - - hypothetical protein JCGZ_10310 [Jatropha curcas]
5 Hb_002217_400 0.0419698365 - - polynucleotidyl transferase, ribonuclease H-like protein [Arabidopsis thaliana]
6 Hb_007138_010 0.045817252 - - PREDICTED: putative laccase-9 [Jatropha curcas]
7 Hb_138585_070 0.0480147808 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003082_090 0.0496707317 - - hypothetical protein POPTR_0013s099451g, partial [Populus trichocarpa]
9 Hb_001369_510 0.0507760593 - - PREDICTED: uncharacterized protein LOC105766768 [Gossypium raimondii]
10 Hb_000617_160 0.0532718658 - - -
11 Hb_000732_200 0.067954208 - - conserved hypothetical protein [Ricinus communis]
12 Hb_163989_010 0.0794021826 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002641_090 0.0912509055 - - PREDICTED: uncharacterized protein LOC105643559 [Jatropha curcas]
14 Hb_073870_010 0.0945941644 - - hypothetical protein RCOM_0725510 [Ricinus communis]
15 Hb_001404_060 0.0949537873 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
16 Hb_000984_280 0.0970186172 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 2 [Jatropha curcas]
17 Hb_004598_020 0.0972198051 transcription factor TF Family: ERF Transcriptional factor TINY, putative [Ricinus communis]
18 Hb_006103_050 0.0986043831 - - -
19 Hb_070266_010 0.1000668876 - - LRR.XII-like protein, partial [Platanus x acerifolia]
20 Hb_002267_110 0.1061026251 - - -

Gene co-expression network

sample Hb_005389_030 Hb_005389_030 Hb_005357_040 Hb_005357_040 Hb_005389_030--Hb_005357_040 Hb_000028_450 Hb_000028_450 Hb_005389_030--Hb_000028_450 Hb_100953_010 Hb_100953_010 Hb_005389_030--Hb_100953_010 Hb_002217_400 Hb_002217_400 Hb_005389_030--Hb_002217_400 Hb_007138_010 Hb_007138_010 Hb_005389_030--Hb_007138_010 Hb_138585_070 Hb_138585_070 Hb_005389_030--Hb_138585_070 Hb_005357_040--Hb_000028_450 Hb_005357_040--Hb_138585_070 Hb_000617_160 Hb_000617_160 Hb_005357_040--Hb_000617_160 Hb_005357_040--Hb_002217_400 Hb_000732_200 Hb_000732_200 Hb_005357_040--Hb_000732_200 Hb_000028_450--Hb_002217_400 Hb_003082_090 Hb_003082_090 Hb_000028_450--Hb_003082_090 Hb_000028_450--Hb_138585_070 Hb_000028_450--Hb_000617_160 Hb_001369_510 Hb_001369_510 Hb_100953_010--Hb_001369_510 Hb_100953_010--Hb_007138_010 Hb_100953_010--Hb_005357_040 Hb_100953_010--Hb_000028_450 Hb_073870_010 Hb_073870_010 Hb_100953_010--Hb_073870_010 Hb_002217_400--Hb_003082_090 Hb_002217_400--Hb_000617_160 Hb_002217_400--Hb_138585_070 Hb_002217_400--Hb_000732_200 Hb_007138_010--Hb_001369_510 Hb_007138_010--Hb_073870_010 Hb_001404_060 Hb_001404_060 Hb_007138_010--Hb_001404_060 Hb_007138_010--Hb_005357_040 Hb_138585_070--Hb_000617_160 Hb_138585_070--Hb_000732_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0272688 0.0785946 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0124441 0

CAGE analysis