Hb_005389_090

Information

Type transcription factor
Description TF Family: AUX/IAA
Location Contig5389: 108416-112308
Sequence    

Annotation

kegg
ID rcu:RCOM_1051590
description Auxin-responsive protein IAA27, putative
nr
ID XP_002514266.1
description Auxin-responsive protein IAA27, putative [Ricinus communis]
swissprot
ID Q9ZSY8
description Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=1 SV=1
trembl
ID B9RKM2
description Auxin-responsive protein OS=Ricinus communis GN=RCOM_1051590 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin-responsive protein iaa27

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47715: 108423-108865 , PASA_asmbl_47716: 108926-112425
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005389_090 0.0 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA27, putative [Ricinus communis]
2 Hb_132517_010 0.0694639183 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like isoform X3 [Populus euphratica]
3 Hb_001897_030 0.072824792 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
4 Hb_006573_060 0.0950887385 - - hypothetical protein [Bruguiera gymnorhiza]
5 Hb_000991_110 0.1045295169 - - PREDICTED: uncharacterized protein LOC105636336 [Jatropha curcas]
6 Hb_007313_050 0.1138024893 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
7 Hb_005396_110 0.1173384849 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001059_050 0.1182737825 - - PREDICTED: putative F-box/LRR-repeat protein At3g18150 [Jatropha curcas]
9 Hb_024357_010 0.1225088063 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
10 Hb_012395_260 0.1269140811 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA13 isoform X1 [Jatropha curcas]
11 Hb_021443_020 0.1271298624 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
12 Hb_002639_120 0.127626834 - - unnamed protein product [Vitis vinifera]
13 Hb_003864_020 0.1277718451 - - kinase, putative [Ricinus communis]
14 Hb_000777_020 0.1288255771 - - PREDICTED: 3-ketoacyl-CoA synthase 11 [Jatropha curcas]
15 Hb_145268_010 0.1290779248 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Jatropha curcas]
16 Hb_151616_010 0.1297912975 - - -
17 Hb_087468_010 0.1310152009 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
18 Hb_000702_040 0.1332709052 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
19 Hb_000509_040 0.1341589339 - - hypothetical protein VITISV_009716 [Vitis vinifera]
20 Hb_000661_010 0.1354508354 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]

Gene co-expression network

sample Hb_005389_090 Hb_005389_090 Hb_132517_010 Hb_132517_010 Hb_005389_090--Hb_132517_010 Hb_001897_030 Hb_001897_030 Hb_005389_090--Hb_001897_030 Hb_006573_060 Hb_006573_060 Hb_005389_090--Hb_006573_060 Hb_000991_110 Hb_000991_110 Hb_005389_090--Hb_000991_110 Hb_007313_050 Hb_007313_050 Hb_005389_090--Hb_007313_050 Hb_005396_110 Hb_005396_110 Hb_005389_090--Hb_005396_110 Hb_132517_010--Hb_005396_110 Hb_001059_050 Hb_001059_050 Hb_132517_010--Hb_001059_050 Hb_132517_010--Hb_001897_030 Hb_151616_010 Hb_151616_010 Hb_132517_010--Hb_151616_010 Hb_001227_010 Hb_001227_010 Hb_132517_010--Hb_001227_010 Hb_001897_030--Hb_000991_110 Hb_000509_040 Hb_000509_040 Hb_001897_030--Hb_000509_040 Hb_001897_030--Hb_005396_110 Hb_087468_010 Hb_087468_010 Hb_001897_030--Hb_087468_010 Hb_001587_220 Hb_001587_220 Hb_006573_060--Hb_001587_220 Hb_006573_060--Hb_000991_110 Hb_000702_040 Hb_000702_040 Hb_006573_060--Hb_000702_040 Hb_004586_230 Hb_004586_230 Hb_006573_060--Hb_004586_230 Hb_003939_090 Hb_003939_090 Hb_006573_060--Hb_003939_090 Hb_000723_060 Hb_000723_060 Hb_000991_110--Hb_000723_060 Hb_002049_030 Hb_002049_030 Hb_000991_110--Hb_002049_030 Hb_000991_110--Hb_007313_050 Hb_021443_020 Hb_021443_020 Hb_007313_050--Hb_021443_020 Hb_001213_080 Hb_001213_080 Hb_007313_050--Hb_001213_080 Hb_007313_050--Hb_003939_090 Hb_007313_050--Hb_001059_050 Hb_035006_010 Hb_035006_010 Hb_007313_050--Hb_035006_010 Hb_000286_210 Hb_000286_210 Hb_007313_050--Hb_000286_210 Hb_005396_110--Hb_000509_040 Hb_000111_150 Hb_000111_150 Hb_005396_110--Hb_000111_150 Hb_005396_110--Hb_001059_050 Hb_005396_110--Hb_087468_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.52928 85.9783 17.6657 71.9165 0.30708 0.302771
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0350187 0.165291 0.0515499 9.66873 1.54926

CAGE analysis