Hb_005389_140

Information

Type -
Description -
Location Contig5389: 151858-153462
Sequence    

Annotation

kegg
ID rcu:RCOM_1051120
description Xyloglucan endotransglucosylase/hydrolase protein 14 precursor, putative (EC:2.4.1.207)
nr
ID XP_002514259.1
description Xyloglucan endotransglucosylase/hydrolase protein 14 precursor, putative [Ricinus communis]
swissprot
ID Q9SVV2
description Probable xyloglucan endotransglucosylase/hydrolase protein 26 OS=Arabidopsis thaliana GN=XTH26 PE=2 SV=1
trembl
ID B9RKL5
description Xyloglucan endotransglucosylase/hydrolase OS=Ricinus communis GN=RCOM_1051120 PE=3 SV=1
Gene Ontology
ID GO:0005618
description probable xyloglucan endotransglucosylase hydrolase protein 26

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47721: 151244-151573 , PASA_asmbl_47723: 152139-152381
cDNA
(Sanger)
(ID:Location)		 043_O22r.ab1: 151234-153304

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005389_140 0.0 - - Xyloglucan endotransglucosylase/hydrolase protein 14 precursor, putative [Ricinus communis]
2 Hb_005714_040 0.0729826132 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000590_090 0.0825502827 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
4 Hb_000062_230 0.0978813694 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]
5 Hb_004813_010 0.0982784076 - - nucleic acid binding protein, putative [Ricinus communis]
6 Hb_000183_070 0.1030793993 - - -
7 Hb_004374_010 0.104322855 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
8 Hb_002044_090 0.1089424344 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
9 Hb_000015_010 0.109110612 - - -
10 Hb_001514_020 0.1095019795 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
11 Hb_143766_090 0.1102857828 - - 60S ribosomal protein L31B [Hevea brasiliensis]
12 Hb_000771_110 0.11190062 - - protein phosphatase 2C [Hevea brasiliensis]
13 Hb_001437_300 0.1123133786 - - -
14 Hb_002249_140 0.1137323136 - - PREDICTED: uncharacterized protein LOC105648715 [Jatropha curcas]
15 Hb_006501_150 0.1165509212 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000107_390 0.1183889536 - - PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera]
17 Hb_002619_010 0.1203854112 - - -
18 Hb_002377_040 0.1207572715 - - serine/threonine protein kinase, putative [Ricinus communis]
19 Hb_000481_010 0.1207984749 - - PREDICTED: F-box/kelch-repeat protein SKIP6 [Jatropha curcas]
20 Hb_000188_190 0.1229116052 - - -

Gene co-expression network

sample Hb_005389_140 Hb_005389_140 Hb_005714_040 Hb_005714_040 Hb_005389_140--Hb_005714_040 Hb_000590_090 Hb_000590_090 Hb_005389_140--Hb_000590_090 Hb_000062_230 Hb_000062_230 Hb_005389_140--Hb_000062_230 Hb_004813_010 Hb_004813_010 Hb_005389_140--Hb_004813_010 Hb_000183_070 Hb_000183_070 Hb_005389_140--Hb_000183_070 Hb_004374_010 Hb_004374_010 Hb_005389_140--Hb_004374_010 Hb_005714_040--Hb_000183_070 Hb_005015_010 Hb_005015_010 Hb_005714_040--Hb_005015_010 Hb_005714_040--Hb_000590_090 Hb_006452_190 Hb_006452_190 Hb_005714_040--Hb_006452_190 Hb_000188_190 Hb_000188_190 Hb_005714_040--Hb_000188_190 Hb_001386_130 Hb_001386_130 Hb_000590_090--Hb_001386_130 Hb_000680_150 Hb_000680_150 Hb_000590_090--Hb_000680_150 Hb_000714_020 Hb_000714_020 Hb_000590_090--Hb_000714_020 Hb_001454_390 Hb_001454_390 Hb_000590_090--Hb_001454_390 Hb_002044_090 Hb_002044_090 Hb_000062_230--Hb_002044_090 Hb_002377_040 Hb_002377_040 Hb_000062_230--Hb_002377_040 Hb_005754_020 Hb_005754_020 Hb_000062_230--Hb_005754_020 Hb_000062_230--Hb_004374_010 Hb_003352_050 Hb_003352_050 Hb_000062_230--Hb_003352_050 Hb_000062_230--Hb_004813_010 Hb_001493_100 Hb_001493_100 Hb_004813_010--Hb_001493_100 Hb_001514_020 Hb_001514_020 Hb_004813_010--Hb_001514_020 Hb_004096_170 Hb_004096_170 Hb_004813_010--Hb_004096_170 Hb_004813_010--Hb_002044_090 Hb_000847_070 Hb_000847_070 Hb_004813_010--Hb_000847_070 Hb_001437_300 Hb_001437_300 Hb_000183_070--Hb_001437_300 Hb_000183_070--Hb_005015_010 Hb_006501_150 Hb_006501_150 Hb_000183_070--Hb_006501_150 Hb_000183_070--Hb_006452_190 Hb_001956_120 Hb_001956_120 Hb_004374_010--Hb_001956_120 Hb_000015_010 Hb_000015_010 Hb_004374_010--Hb_000015_010 Hb_017098_030 Hb_017098_030 Hb_004374_010--Hb_017098_030 Hb_004374_010--Hb_002044_090 Hb_011537_040 Hb_011537_040 Hb_004374_010--Hb_011537_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.48065 0.342466 0.432084 0.0643798 2.05221 1.12682
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.34863 1.01446 0.841753 0.297609 0.186974

CAGE analysis