Hb_005389_150

Information

Type -
Description -
Location Contig5389: 154215-154712
Sequence    

Annotation

kegg
ID rcu:RCOM_1051110
description hypothetical protein
nr
ID XP_002514258.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RKL4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1051110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47720: 153995-154275
cDNA
(Sanger)
(ID:Location)		 043_O22r.ab1: 151234-153304

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005389_150 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003266_050 0.0688844397 - - PREDICTED: small nuclear ribonucleoprotein Sm D1 [Amborella trichopoda]
3 Hb_001009_040 0.0747162933 - - PREDICTED: mitochondrial pyruvate carrier 1 [Jatropha curcas]
4 Hb_000169_010 0.0835688986 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
5 Hb_003011_040 0.0919416542 - - PREDICTED: uncharacterized protein LOC102629536 isoform X2 [Citrus sinensis]
6 Hb_001269_320 0.0934253555 - - 40S ribosomal protein S12A [Hevea brasiliensis]
7 Hb_010691_060 0.0938190031 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
8 Hb_007617_050 0.0983123524 - - Isoflavone reductase, putative [Ricinus communis]
9 Hb_003878_010 0.0984192428 - - PREDICTED: uncharacterized protein LOC105632145 [Jatropha curcas]
10 Hb_001329_220 0.0990077728 - - conserved hypothetical protein [Ricinus communis]
11 Hb_032717_080 0.0993635333 - - gamma-soluble nsf attachment protein, putative [Ricinus communis]
12 Hb_000500_090 0.1003184296 - - nucleoside diphosphate kinase 2 [Hevea brasiliensis]
13 Hb_003874_020 0.1003628439 - - hypothetical protein POPTR_0012s02280g [Populus trichocarpa]
14 Hb_002301_280 0.101059348 transcription factor TF Family: SBP hypothetical protein JCGZ_21462 [Jatropha curcas]
15 Hb_000567_030 0.1018595075 - - hypothetical protein JCGZ_21550 [Jatropha curcas]
16 Hb_007254_040 0.1029160544 - - PREDICTED: protein MITOFERRINLIKE 1, chloroplastic [Jatropha curcas]
17 Hb_000157_030 0.1032570277 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
18 Hb_007632_090 0.1033512906 - - PREDICTED: nicotinamide/nicotinic acid mononucleotide adenylyltransferase isoform X1 [Jatropha curcas]
19 Hb_123475_010 0.1035284667 - - PREDICTED: hepatocyte growth factor-regulated tyrosine kinase substrate [Jatropha curcas]
20 Hb_002232_170 0.1038404522 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]

Gene co-expression network

sample Hb_005389_150 Hb_005389_150 Hb_003266_050 Hb_003266_050 Hb_005389_150--Hb_003266_050 Hb_001009_040 Hb_001009_040 Hb_005389_150--Hb_001009_040 Hb_000169_010 Hb_000169_010 Hb_005389_150--Hb_000169_010 Hb_003011_040 Hb_003011_040 Hb_005389_150--Hb_003011_040 Hb_001269_320 Hb_001269_320 Hb_005389_150--Hb_001269_320 Hb_010691_060 Hb_010691_060 Hb_005389_150--Hb_010691_060 Hb_000815_040 Hb_000815_040 Hb_003266_050--Hb_000815_040 Hb_003266_050--Hb_010691_060 Hb_001278_110 Hb_001278_110 Hb_003266_050--Hb_001278_110 Hb_002890_140 Hb_002890_140 Hb_003266_050--Hb_002890_140 Hb_003058_130 Hb_003058_130 Hb_003266_050--Hb_003058_130 Hb_001009_040--Hb_000169_010 Hb_000808_040 Hb_000808_040 Hb_001009_040--Hb_000808_040 Hb_061908_010 Hb_061908_010 Hb_001009_040--Hb_061908_010 Hb_001158_220 Hb_001158_220 Hb_001009_040--Hb_001158_220 Hb_008406_160 Hb_008406_160 Hb_001009_040--Hb_008406_160 Hb_003392_040 Hb_003392_040 Hb_000169_010--Hb_003392_040 Hb_000720_120 Hb_000720_120 Hb_000169_010--Hb_000720_120 Hb_005539_030 Hb_005539_030 Hb_000169_010--Hb_005539_030 Hb_007254_040 Hb_007254_040 Hb_000169_010--Hb_007254_040 Hb_000032_570 Hb_000032_570 Hb_000169_010--Hb_000032_570 Hb_001135_050 Hb_001135_050 Hb_000169_010--Hb_001135_050 Hb_004223_220 Hb_004223_220 Hb_003011_040--Hb_004223_220 Hb_000155_180 Hb_000155_180 Hb_003011_040--Hb_000155_180 Hb_093666_020 Hb_093666_020 Hb_003011_040--Hb_093666_020 Hb_010180_010 Hb_010180_010 Hb_003011_040--Hb_010180_010 Hb_003011_040--Hb_001269_320 Hb_001269_320--Hb_003266_050 Hb_007229_070 Hb_007229_070 Hb_001269_320--Hb_007229_070 Hb_004440_050 Hb_004440_050 Hb_001269_320--Hb_004440_050 Hb_001369_660 Hb_001369_660 Hb_001269_320--Hb_001369_660 Hb_001279_070 Hb_001279_070 Hb_001269_320--Hb_001279_070 Hb_001766_150 Hb_001766_150 Hb_010691_060--Hb_001766_150 Hb_000157_030 Hb_000157_030 Hb_010691_060--Hb_000157_030 Hb_185830_020 Hb_185830_020 Hb_010691_060--Hb_185830_020 Hb_002391_300 Hb_002391_300 Hb_010691_060--Hb_002391_300 Hb_010691_060--Hb_003058_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.4395 7.56333 8.00574 12.3269 20.4943 34.2677
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.7473 27.5953 8.98284 16.6845 4.55951

CAGE analysis