Hb_005389_170

Information

Type -
Description -
Location Contig5389: 169310-174425
Sequence    

Annotation

kegg
ID rcu:RCOM_1050970
description lactoylglutathione lyase, putative (EC:4.4.1.5)
nr
ID XP_012076751.1
description PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
swissprot
ID Q8W593
description Probable lactoylglutathione lyase, chloroplast OS=Arabidopsis thaliana GN=At1g67280 PE=1 SV=1
trembl
ID A0A061GLJ1
description Lactoylglutathione lyase OS=Theobroma cacao GN=TCM_037825 PE=3 SV=1
Gene Ontology
ID GO:0009570
description probable lactoylglutathione chloroplast

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47728: 169322-174495
cDNA
(Sanger)
(ID:Location)		 018_L04.ab1: 173161-174495

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005389_170 0.0 - - PREDICTED: probable lactoylglutathione lyase, chloroplast isoform X1 [Jatropha curcas]
2 Hb_010174_090 0.0818777906 - - PREDICTED: ALBINO3-like protein 1, chloroplastic [Jatropha curcas]
3 Hb_003752_070 0.0892834361 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
4 Hb_000613_120 0.0902846408 transcription factor TF Family: SET PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
5 Hb_005162_110 0.0907713025 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
6 Hb_001935_100 0.0954576958 - - structural molecule, putative [Ricinus communis]
7 Hb_006787_090 0.0958000682 - - PREDICTED: uncharacterized protein LOC105646282 [Jatropha curcas]
8 Hb_000311_120 0.0959894233 - - PREDICTED: NADPH-dependent thioredoxin reductase 3 [Populus euphratica]
9 Hb_021650_010 0.0995421738 - - hypothetical protein JCGZ_09648 [Jatropha curcas]
10 Hb_000300_180 0.1034551502 - - transcription initiation factor brf1, putative [Ricinus communis]
11 Hb_000532_100 0.1046041111 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
12 Hb_000284_130 0.1082251708 - - sodium-bile acid cotransporter, putative [Ricinus communis]
13 Hb_000051_060 0.1104851772 - - conserved hypothetical protein [Ricinus communis]
14 Hb_006569_040 0.1117811659 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105650906 [Jatropha curcas]
15 Hb_000580_150 0.111919668 - - PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial [Jatropha curcas]
16 Hb_001623_130 0.1131742327 - - PREDICTED: GDT1-like protein 2, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_001930_030 0.1131999258 - - PREDICTED: 30S ribosomal protein S10, chloroplastic [Jatropha curcas]
18 Hb_000445_070 0.1144106034 - - PREDICTED: uncharacterized protein LOC105638998 [Jatropha curcas]
19 Hb_001824_080 0.1153393033 - - PREDICTED: 2-aminoethanethiol dioxygenase isoform X1 [Jatropha curcas]
20 Hb_000802_130 0.1161317572 - - hypothetical protein JCGZ_04636 [Jatropha curcas]

Gene co-expression network

sample Hb_005389_170 Hb_005389_170 Hb_010174_090 Hb_010174_090 Hb_005389_170--Hb_010174_090 Hb_003752_070 Hb_003752_070 Hb_005389_170--Hb_003752_070 Hb_000613_120 Hb_000613_120 Hb_005389_170--Hb_000613_120 Hb_005162_110 Hb_005162_110 Hb_005389_170--Hb_005162_110 Hb_001935_100 Hb_001935_100 Hb_005389_170--Hb_001935_100 Hb_006787_090 Hb_006787_090 Hb_005389_170--Hb_006787_090 Hb_000311_120 Hb_000311_120 Hb_010174_090--Hb_000311_120 Hb_010174_090--Hb_000613_120 Hb_010174_090--Hb_006787_090 Hb_003529_140 Hb_003529_140 Hb_010174_090--Hb_003529_140 Hb_006569_040 Hb_006569_040 Hb_010174_090--Hb_006569_040 Hb_000826_030 Hb_000826_030 Hb_010174_090--Hb_000826_030 Hb_021650_010 Hb_021650_010 Hb_003752_070--Hb_021650_010 Hb_001195_270 Hb_001195_270 Hb_003752_070--Hb_001195_270 Hb_003752_070--Hb_006787_090 Hb_003752_070--Hb_005162_110 Hb_000051_060 Hb_000051_060 Hb_003752_070--Hb_000051_060 Hb_003752_070--Hb_010174_090 Hb_000802_130 Hb_000802_130 Hb_000613_120--Hb_000802_130 Hb_001789_160 Hb_001789_160 Hb_000613_120--Hb_001789_160 Hb_000613_120--Hb_006787_090 Hb_004109_260 Hb_004109_260 Hb_000613_120--Hb_004109_260 Hb_031042_060 Hb_031042_060 Hb_000613_120--Hb_031042_060 Hb_005946_040 Hb_005946_040 Hb_005162_110--Hb_005946_040 Hb_005162_110--Hb_021650_010 Hb_000003_170 Hb_000003_170 Hb_005162_110--Hb_000003_170 Hb_005731_110 Hb_005731_110 Hb_005162_110--Hb_005731_110 Hb_005162_110--Hb_000051_060 Hb_001935_100--Hb_000051_060 Hb_000227_170 Hb_000227_170 Hb_001935_100--Hb_000227_170 Hb_005539_010 Hb_005539_010 Hb_001935_100--Hb_005539_010 Hb_001410_070 Hb_001410_070 Hb_001935_100--Hb_001410_070 Hb_000796_160 Hb_000796_160 Hb_001935_100--Hb_000796_160 Hb_001935_100--Hb_005946_040 Hb_006787_090--Hb_000311_120 Hb_000284_130 Hb_000284_130 Hb_006787_090--Hb_000284_130 Hb_000144_060 Hb_000144_060 Hb_006787_090--Hb_000144_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.834 16.7411 56.8624 11.6465 28.0558 13.8019
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.7244 19.6288 13.32 12.1408 46.9037

CAGE analysis