Hb_005391_030

Information

Type -
Description -
Location Contig5391: 25089-27736
Sequence    

Annotation

kegg
ID zma:100272576
description putative cytidine/deoxycytidylate deaminase family protein
nr
ID NP_001140513.1
description putative cytidine/deoxycytidylate deaminase family protein [Zea mays]
swissprot
ID O34598
description Guanine deaminase OS=Bacillus subtilis (strain 168) GN=guaD PE=1 SV=1
trembl
ID B4FPE0
description Cytidine/deoxycytidylate deaminase family protein OS=Zea mays GN=LOC100272576 PE=2 SV=1
Gene Ontology
ID GO:0008270
description trna(adenine ) chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47743: 25161-27693
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005391_030 0.0 - - putative cytidine/deoxycytidylate deaminase family protein [Zea mays]
2 Hb_000193_120 0.0804153451 - - PREDICTED: protein preY, mitochondrial [Jatropha curcas]
3 Hb_000356_090 0.0854389822 - - PREDICTED: uncharacterized protein At2g38710 [Jatropha curcas]
4 Hb_000103_010 0.0879587412 - - 20S proteasome beta subunit D2 [Hevea brasiliensis]
5 Hb_001085_270 0.0911498619 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
6 Hb_180074_010 0.0932167611 - - Single-stranded DNA-binding protein, mitochondrial precursor, putative [Ricinus communis]
7 Hb_007441_260 0.0935603001 - - PREDICTED: ATP synthase subunit delta', mitochondrial-like [Jatropha curcas]
8 Hb_000181_300 0.0975218903 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
9 Hb_000417_360 0.1017106056 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial [Jatropha curcas]
10 Hb_000567_410 0.1035789 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
11 Hb_000258_250 0.1047250446 - - Origin recognition complex subunit, putative [Ricinus communis]
12 Hb_000087_130 0.1048052534 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
13 Hb_005000_180 0.1054720032 - - hypothetical protein JCGZ_07408 [Jatropha curcas]
14 Hb_001314_040 0.1055272078 - - hypothetical protein POPTR_0011s10470g [Populus trichocarpa]
15 Hb_001155_040 0.105912437 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
16 Hb_002374_390 0.107738023 - - vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis]
17 Hb_091433_020 0.1078086709 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
18 Hb_000012_100 0.1098030551 - - UPF0587 protein C1orf123 homolog [Jatropha curcas]
19 Hb_006478_160 0.1099435296 - - 20S proteasome beta subunit D1 [Hevea brasiliensis]
20 Hb_001085_120 0.1100859116 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005391_030 Hb_005391_030 Hb_000193_120 Hb_000193_120 Hb_005391_030--Hb_000193_120 Hb_000356_090 Hb_000356_090 Hb_005391_030--Hb_000356_090 Hb_000103_010 Hb_000103_010 Hb_005391_030--Hb_000103_010 Hb_001085_270 Hb_001085_270 Hb_005391_030--Hb_001085_270 Hb_180074_010 Hb_180074_010 Hb_005391_030--Hb_180074_010 Hb_007441_260 Hb_007441_260 Hb_005391_030--Hb_007441_260 Hb_000181_300 Hb_000181_300 Hb_000193_120--Hb_000181_300 Hb_000193_120--Hb_000103_010 Hb_000012_100 Hb_000012_100 Hb_000193_120--Hb_000012_100 Hb_004156_040 Hb_004156_040 Hb_000193_120--Hb_004156_040 Hb_001634_040 Hb_001634_040 Hb_000193_120--Hb_001634_040 Hb_001016_090 Hb_001016_090 Hb_000193_120--Hb_001016_090 Hb_000087_130 Hb_000087_130 Hb_000356_090--Hb_000087_130 Hb_006915_040 Hb_006915_040 Hb_000356_090--Hb_006915_040 Hb_000189_240 Hb_000189_240 Hb_000356_090--Hb_000189_240 Hb_000258_250 Hb_000258_250 Hb_000356_090--Hb_000258_250 Hb_000317_070 Hb_000317_070 Hb_000356_090--Hb_000317_070 Hb_001085_120 Hb_001085_120 Hb_000103_010--Hb_001085_120 Hb_000103_010--Hb_000181_300 Hb_004375_140 Hb_004375_140 Hb_000103_010--Hb_004375_140 Hb_003077_040 Hb_003077_040 Hb_000103_010--Hb_003077_040 Hb_005181_030 Hb_005181_030 Hb_000103_010--Hb_005181_030 Hb_001369_170 Hb_001369_170 Hb_001085_270--Hb_001369_170 Hb_000567_410 Hb_000567_410 Hb_001085_270--Hb_000567_410 Hb_000061_130 Hb_000061_130 Hb_001085_270--Hb_000061_130 Hb_002909_130 Hb_002909_130 Hb_001085_270--Hb_002909_130 Hb_172221_010 Hb_172221_010 Hb_001085_270--Hb_172221_010 Hb_001085_270--Hb_000193_120 Hb_033642_080 Hb_033642_080 Hb_180074_010--Hb_033642_080 Hb_091433_020 Hb_091433_020 Hb_180074_010--Hb_091433_020 Hb_011671_440 Hb_011671_440 Hb_180074_010--Hb_011671_440 Hb_000896_040 Hb_000896_040 Hb_180074_010--Hb_000896_040 Hb_006478_150 Hb_006478_150 Hb_180074_010--Hb_006478_150 Hb_000384_120 Hb_000384_120 Hb_007441_260--Hb_000384_120 Hb_007441_260--Hb_000087_130 Hb_007192_100 Hb_007192_100 Hb_007441_260--Hb_007192_100 Hb_003880_030 Hb_003880_030 Hb_007441_260--Hb_003880_030 Hb_000417_260 Hb_000417_260 Hb_007441_260--Hb_000417_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.1887 4.80413 14.5368 15.1255 6.69715 8.42993
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.5825 59.794 32.5078 21.4789 6.95485

CAGE analysis