Hb_005394_010

Information

Type -
Description -
Location Contig5394: 2065-2814
Sequence    

Annotation

kegg
ID rcu:RCOM_1391250
description hypothetical protein
nr
ID XP_012072613.1
description PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
swissprot
ID O80683
description Calmodulin-binding protein 25 OS=Arabidopsis thaliana GN=CAMBP25 PE=1 SV=1
trembl
ID A0A067L166
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06394 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47751: 1716-3117
cDNA
(Sanger)
(ID:Location)		 027_C21.ab1: 2465-2979

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005394_010 0.0 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
2 Hb_041895_040 0.0949169227 - - conserved hypothetical protein [Ricinus communis]
3 Hb_011671_110 0.0951747497 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
4 Hb_001246_160 0.1034022011 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
5 Hb_047442_010 0.1059023937 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
6 Hb_015026_040 0.1067029539 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]
7 Hb_000163_230 0.111774354 - - Phytochrome A-associated F-box protein, putative [Ricinus communis]
8 Hb_032202_050 0.1149216148 transcription factor TF Family: TCP conserved hypothetical protein [Ricinus communis]
9 Hb_000671_060 0.122514051 - - protein binding protein, putative [Ricinus communis]
10 Hb_004837_220 0.1229362389 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
11 Hb_090782_010 0.1246892401 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
12 Hb_001776_200 0.1257720689 - - PREDICTED: COP9 signalosome complex subunit 2 isoform X2 [Pyrus x bretschneideri]
13 Hb_003747_050 0.1280472395 - - PREDICTED: WD repeat-containing protein LWD1 [Jatropha curcas]
14 Hb_010368_080 0.1286887663 - - PREDICTED: uncharacterized protein LOC105630287 [Jatropha curcas]
15 Hb_001102_090 0.1308294834 - - PREDICTED: mitogen-activated protein kinase 19 [Jatropha curcas]
16 Hb_001894_160 0.1318390529 - - conserved hypothetical protein [Ricinus communis]
17 Hb_015026_020 0.1324026406 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
18 Hb_000221_230 0.133800671 transcription factor TF Family: Jumonji PREDICTED: F-box protein At1g78280 [Jatropha curcas]
19 Hb_003090_150 0.1349794874 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 1 [Jatropha curcas]
20 Hb_000111_390 0.1358897949 - - PREDICTED: uncharacterized protein LOC105631262 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005394_010 Hb_005394_010 Hb_041895_040 Hb_041895_040 Hb_005394_010--Hb_041895_040 Hb_011671_110 Hb_011671_110 Hb_005394_010--Hb_011671_110 Hb_001246_160 Hb_001246_160 Hb_005394_010--Hb_001246_160 Hb_047442_010 Hb_047442_010 Hb_005394_010--Hb_047442_010 Hb_015026_040 Hb_015026_040 Hb_005394_010--Hb_015026_040 Hb_000163_230 Hb_000163_230 Hb_005394_010--Hb_000163_230 Hb_041895_040--Hb_015026_040 Hb_041895_040--Hb_001246_160 Hb_041895_040--Hb_000163_230 Hb_001769_110 Hb_001769_110 Hb_041895_040--Hb_001769_110 Hb_000594_110 Hb_000594_110 Hb_041895_040--Hb_000594_110 Hb_001894_160 Hb_001894_160 Hb_011671_110--Hb_001894_160 Hb_005941_020 Hb_005941_020 Hb_011671_110--Hb_005941_020 Hb_033930_010 Hb_033930_010 Hb_011671_110--Hb_033930_010 Hb_015026_020 Hb_015026_020 Hb_011671_110--Hb_015026_020 Hb_001776_200 Hb_001776_200 Hb_011671_110--Hb_001776_200 Hb_000749_070 Hb_000749_070 Hb_001246_160--Hb_000749_070 Hb_000009_200 Hb_000009_200 Hb_001246_160--Hb_000009_200 Hb_002122_030 Hb_002122_030 Hb_001246_160--Hb_002122_030 Hb_018790_050 Hb_018790_050 Hb_001246_160--Hb_018790_050 Hb_056196_060 Hb_056196_060 Hb_001246_160--Hb_056196_060 Hb_047442_010--Hb_011671_110 Hb_002965_070 Hb_002965_070 Hb_047442_010--Hb_002965_070 Hb_000317_190 Hb_000317_190 Hb_047442_010--Hb_000317_190 Hb_000111_390 Hb_000111_390 Hb_047442_010--Hb_000111_390 Hb_047442_010--Hb_001894_160 Hb_000221_230 Hb_000221_230 Hb_015026_040--Hb_000221_230 Hb_000445_100 Hb_000445_100 Hb_015026_040--Hb_000445_100 Hb_090782_010 Hb_090782_010 Hb_015026_040--Hb_090782_010 Hb_008020_020 Hb_008020_020 Hb_015026_040--Hb_008020_020 Hb_000454_140 Hb_000454_140 Hb_000163_230--Hb_000454_140 Hb_001009_090 Hb_001009_090 Hb_000163_230--Hb_001009_090 Hb_000045_260 Hb_000045_260 Hb_000163_230--Hb_000045_260 Hb_003078_030 Hb_003078_030 Hb_000163_230--Hb_003078_030 Hb_000671_060 Hb_000671_060 Hb_000163_230--Hb_000671_060 Hb_000186_200 Hb_000186_200 Hb_000163_230--Hb_000186_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.853 188.333 216.691 101.098 34.7759 36.1121
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.3499 19.7873 13.937 36.3377 35.1837

CAGE analysis