Hb_005396_010

Information

Type -
Description -
Location Contig5396: 3498-4045
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_012082003.1
description PREDICTED: interleukin enhancer-binding factor 3-B-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K2T0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18259 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005396_010 0.0 - - PREDICTED: interleukin enhancer-binding factor 3-B-like [Jatropha curcas]
2 Hb_124625_010 0.0275686249 - - hypothetical protein JCGZ_01142 [Jatropha curcas]
3 Hb_000800_060 0.0321800145 - - hypothetical protein POPTR_0008s02870g [Populus trichocarpa]
4 Hb_090510_010 0.0386230867 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
5 Hb_050898_020 0.0695820087 - - hypothetical protein JCGZ_19965 [Jatropha curcas]
6 Hb_000668_070 0.082891451 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002747_010 0.1014284872 - - PREDICTED: alcohol dehydrogenase-like 1 [Jatropha curcas]
8 Hb_002966_030 0.1055539831 - - conserved hypothetical protein [Ricinus communis]
9 Hb_069151_010 0.1085394479 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Gossypium raimondii]
10 Hb_003166_020 0.1152995202 - - PREDICTED: RNA-binding E3 ubiquitin-protein ligase MEX3C-like [Jatropha curcas]
11 Hb_055154_010 0.1253787565 - - PREDICTED: laccase-7 [Jatropha curcas]
12 Hb_153457_010 0.1259459274 - - Miraculin precursor, putative [Ricinus communis]
13 Hb_012779_010 0.1262834996 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
14 Hb_032621_010 0.1322983661 - - hypothetical protein PHAVU_006G197300g [Phaseolus vulgaris]
15 Hb_000772_070 0.1358937678 - - PREDICTED: uncharacterized protein LOC105649697 [Jatropha curcas]
16 Hb_026650_010 0.1400456235 - - nitrate transporter, putative [Ricinus communis]
17 Hb_116783_010 0.1475209195 - - hypothetical protein POPTR_0011s16190g [Populus trichocarpa]
18 Hb_007320_040 0.1507630943 - - PREDICTED: U-box domain-containing protein 26-like [Jatropha curcas]
19 Hb_002809_020 0.151882022 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
20 Hb_001053_010 0.1537014326 - - PREDICTED: polygalacturonase-like [Jatropha curcas]

Gene co-expression network

sample Hb_005396_010 Hb_005396_010 Hb_124625_010 Hb_124625_010 Hb_005396_010--Hb_124625_010 Hb_000800_060 Hb_000800_060 Hb_005396_010--Hb_000800_060 Hb_090510_010 Hb_090510_010 Hb_005396_010--Hb_090510_010 Hb_050898_020 Hb_050898_020 Hb_005396_010--Hb_050898_020 Hb_000668_070 Hb_000668_070 Hb_005396_010--Hb_000668_070 Hb_002747_010 Hb_002747_010 Hb_005396_010--Hb_002747_010 Hb_124625_010--Hb_050898_020 Hb_124625_010--Hb_000800_060 Hb_124625_010--Hb_090510_010 Hb_124625_010--Hb_000668_070 Hb_002966_030 Hb_002966_030 Hb_124625_010--Hb_002966_030 Hb_000800_060--Hb_090510_010 Hb_000800_060--Hb_000668_070 Hb_069151_010 Hb_069151_010 Hb_000800_060--Hb_069151_010 Hb_000800_060--Hb_050898_020 Hb_090510_010--Hb_069151_010 Hb_055154_010 Hb_055154_010 Hb_090510_010--Hb_055154_010 Hb_090510_010--Hb_000668_070 Hb_050898_020--Hb_000668_070 Hb_000772_070 Hb_000772_070 Hb_050898_020--Hb_000772_070 Hb_050898_020--Hb_002966_030 Hb_000668_070--Hb_069151_010 Hb_002747_010--Hb_002966_030 Hb_153457_010 Hb_153457_010 Hb_002747_010--Hb_153457_010 Hb_012779_010 Hb_012779_010 Hb_002747_010--Hb_012779_010 Hb_175167_020 Hb_175167_020 Hb_002747_010--Hb_175167_020 Hb_000513_100 Hb_000513_100 Hb_002747_010--Hb_000513_100 Hb_007320_040 Hb_007320_040 Hb_002747_010--Hb_007320_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.211529 0.275151 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.37959 0

CAGE analysis