Hb_005396_040

Information

Type -
Description -
Location Contig5396: 18336-22569
Sequence    

Annotation

kegg
ID rcu:RCOM_0704130
description ATP-binding cassette transporter, putative (EC:3.6.3.28)
nr
ID AIU41651.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q7XA72
description ABC transporter G family member 21 OS=Arabidopsis thaliana GN=ABCG21 PE=2 SV=2
trembl
ID A0A097P9T3
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCG21 PE=2 SV=1
Gene Ontology
ID GO:0016020
description abc transporter g family member 21

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47756: 18336-19687 , PASA_asmbl_47757: 19800-21794 , PASA_asmbl_47758: 21798-22326
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005396_040 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_023214_010 0.1029472578 - - aberrant lateral root formation 1 family protein [Populus trichocarpa]
3 Hb_124315_040 0.1106659997 - - hypothetical protein 19 [Hevea brasiliensis]
4 Hb_003207_110 0.123735742 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A synthase hydroxymethylglutaryl coenzyme A synthase [Hevea brasiliensis]
5 Hb_002471_070 0.1305719802 - - Tartrate-resistant acid phosphatase type 5 precursor, putative [Ricinus communis]
6 Hb_002876_030 0.1316577193 - - PREDICTED: 3-ketoacyl-CoA synthase 4 [Jatropha curcas]
7 Hb_012347_010 0.1523745018 transcription factor TF Family: AP2 hypothetical protein JCGZ_03155 [Jatropha curcas]
8 Hb_029584_140 0.1679917765 - - senescence-associated family protein [Populus trichocarpa]
9 Hb_000957_040 0.1714897423 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
10 Hb_001631_070 0.1757542129 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
11 Hb_002027_300 0.176202489 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
12 Hb_010872_060 0.1779873418 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
13 Hb_003540_230 0.1783707606 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
14 Hb_055335_010 0.1810804605 - - PREDICTED: tetraspanin-2 [Jatropha curcas]
15 Hb_000107_070 0.181836813 - - PREDICTED: uncharacterized protein LOC105641007 [Jatropha curcas]
16 Hb_000032_240 0.1820336046 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006070_010 0.1822208166 rubber biosynthesis Gene Name: CPT2 cis-prenyltransferase 3 [Hevea brasiliensis]
18 Hb_000920_150 0.1824999052 - - annexin [Manihot esculenta]
19 Hb_006120_200 0.1827056525 - - PREDICTED: uncharacterized protein LOC103333282 [Prunus mume]
20 Hb_001035_040 0.182733827 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_005396_040 Hb_005396_040 Hb_023214_010 Hb_023214_010 Hb_005396_040--Hb_023214_010 Hb_124315_040 Hb_124315_040 Hb_005396_040--Hb_124315_040 Hb_003207_110 Hb_003207_110 Hb_005396_040--Hb_003207_110 Hb_002471_070 Hb_002471_070 Hb_005396_040--Hb_002471_070 Hb_002876_030 Hb_002876_030 Hb_005396_040--Hb_002876_030 Hb_012347_010 Hb_012347_010 Hb_005396_040--Hb_012347_010 Hb_000107_070 Hb_000107_070 Hb_023214_010--Hb_000107_070 Hb_023214_010--Hb_124315_040 Hb_003020_310 Hb_003020_310 Hb_023214_010--Hb_003020_310 Hb_001035_040 Hb_001035_040 Hb_023214_010--Hb_001035_040 Hb_007120_070 Hb_007120_070 Hb_023214_010--Hb_007120_070 Hb_124315_040--Hb_012347_010 Hb_000957_040 Hb_000957_040 Hb_124315_040--Hb_000957_040 Hb_003540_230 Hb_003540_230 Hb_124315_040--Hb_003540_230 Hb_010872_060 Hb_010872_060 Hb_124315_040--Hb_010872_060 Hb_029584_140 Hb_029584_140 Hb_124315_040--Hb_029584_140 Hb_003207_110--Hb_002471_070 Hb_000920_150 Hb_000920_150 Hb_003207_110--Hb_000920_150 Hb_003207_110--Hb_023214_010 Hb_003207_110--Hb_002876_030 Hb_003207_110--Hb_001035_040 Hb_002471_070--Hb_000920_150 Hb_002471_070--Hb_002876_030 Hb_002471_070--Hb_023214_010 Hb_002471_070--Hb_001035_040 Hb_006070_010 Hb_006070_010 Hb_002876_030--Hb_006070_010 Hb_000139_330 Hb_000139_330 Hb_002876_030--Hb_000139_330 Hb_002876_030--Hb_124315_040 Hb_002027_300 Hb_002027_300 Hb_012347_010--Hb_002027_300 Hb_012347_010--Hb_000957_040 Hb_012347_010--Hb_010872_060 Hb_001140_160 Hb_001140_160 Hb_012347_010--Hb_001140_160 Hb_000130_390 Hb_000130_390 Hb_012347_010--Hb_000130_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
70.9513 3.28874 0.672636 15.8231 10.2014 13.0869
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
83.9838 24.3802 37.4043 2.5648 0.815953

CAGE analysis