Hb_005396_050

Information

Type -
Description -
Location Contig5396: 42401-49752
Sequence    

Annotation

kegg
ID rcu:RCOM_0704240
description hypothetical protein
nr
ID XP_012082005.1
description PREDICTED: phosphoenolpyruvate carboxylase 4 [Jatropha curcas]
swissprot
ID Q8GVE8
description Phosphoenolpyruvate carboxylase 4 OS=Arabidopsis thaliana GN=PPC4 PE=2 SV=1
trembl
ID A0A067JZN9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18263 PE=3 SV=1
Gene Ontology
ID GO:0008964
description phosphoenolpyruvate carboxylase 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005396_050 0.0 - - PREDICTED: phosphoenolpyruvate carboxylase 4 [Jatropha curcas]
2 Hb_156850_030 0.0984735658 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
3 Hb_000237_080 0.1041154208 transcription factor TF Family: PHD PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
4 Hb_001220_030 0.105837252 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
5 Hb_004785_060 0.1077440797 - - PREDICTED: SKP1-interacting partner 15 [Jatropha curcas]
6 Hb_001318_030 0.1081069761 - - PREDICTED: uncharacterized protein LOC105642686 [Jatropha curcas]
7 Hb_000976_150 0.1090684292 - - PREDICTED: serine/arginine-rich splicing factor SR45 [Jatropha curcas]
8 Hb_022092_120 0.1140785599 - - PREDICTED: uncharacterized protein LOC105646971 [Jatropha curcas]
9 Hb_000798_060 0.1147878745 transcription factor TF Family: PHD -
10 Hb_000059_210 0.116086015 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000859_060 0.1178053387 - - PREDICTED: uncharacterized protein LOC105641312 [Jatropha curcas]
12 Hb_000665_030 0.1189842765 - - PREDICTED: uncharacterized protein LOC105637585 isoform X1 [Jatropha curcas]
13 Hb_005551_060 0.1201630224 - - PREDICTED: uncharacterized protein LOC105635819 [Jatropha curcas]
14 Hb_001610_110 0.1213405373 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
15 Hb_002745_010 0.1216584846 - - PREDICTED: SUMO-conjugating enzyme SCE1 [Cucumis sativus]
16 Hb_009615_150 0.1220544375 - - PREDICTED: transcription elongation factor SPT4 homolog 2 [Jatropha curcas]
17 Hb_173953_010 0.1225592729 - - hypothetical protein RCOM_1267370 [Ricinus communis]
18 Hb_000077_070 0.1233578341 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
19 Hb_000953_010 0.1235120966 - - hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]
20 Hb_000032_320 0.1238838912 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005396_050 Hb_005396_050 Hb_156850_030 Hb_156850_030 Hb_005396_050--Hb_156850_030 Hb_000237_080 Hb_000237_080 Hb_005396_050--Hb_000237_080 Hb_001220_030 Hb_001220_030 Hb_005396_050--Hb_001220_030 Hb_004785_060 Hb_004785_060 Hb_005396_050--Hb_004785_060 Hb_001318_030 Hb_001318_030 Hb_005396_050--Hb_001318_030 Hb_000976_150 Hb_000976_150 Hb_005396_050--Hb_000976_150 Hb_000032_320 Hb_000032_320 Hb_156850_030--Hb_000032_320 Hb_001728_100 Hb_001728_100 Hb_156850_030--Hb_001728_100 Hb_000953_010 Hb_000953_010 Hb_156850_030--Hb_000953_010 Hb_000059_210 Hb_000059_210 Hb_156850_030--Hb_000059_210 Hb_004204_080 Hb_004204_080 Hb_156850_030--Hb_004204_080 Hb_000077_070 Hb_000077_070 Hb_156850_030--Hb_000077_070 Hb_000237_080--Hb_001318_030 Hb_000237_080--Hb_004785_060 Hb_009615_150 Hb_009615_150 Hb_000237_080--Hb_009615_150 Hb_002813_050 Hb_002813_050 Hb_000237_080--Hb_002813_050 Hb_005147_090 Hb_005147_090 Hb_000237_080--Hb_005147_090 Hb_000859_060 Hb_000859_060 Hb_000237_080--Hb_000859_060 Hb_002745_010 Hb_002745_010 Hb_001220_030--Hb_002745_010 Hb_000140_070 Hb_000140_070 Hb_001220_030--Hb_000140_070 Hb_000291_190 Hb_000291_190 Hb_001220_030--Hb_000291_190 Hb_124677_060 Hb_124677_060 Hb_001220_030--Hb_124677_060 Hb_000865_080 Hb_000865_080 Hb_001220_030--Hb_000865_080 Hb_001220_030--Hb_000059_210 Hb_004785_060--Hb_000859_060 Hb_000000_370 Hb_000000_370 Hb_004785_060--Hb_000000_370 Hb_012807_050 Hb_012807_050 Hb_004785_060--Hb_012807_050 Hb_001021_170 Hb_001021_170 Hb_004785_060--Hb_001021_170 Hb_004355_020 Hb_004355_020 Hb_004785_060--Hb_004355_020 Hb_000181_070 Hb_000181_070 Hb_004785_060--Hb_000181_070 Hb_004032_270 Hb_004032_270 Hb_001318_030--Hb_004032_270 Hb_001318_030--Hb_012807_050 Hb_004128_060 Hb_004128_060 Hb_001318_030--Hb_004128_060 Hb_009838_050 Hb_009838_050 Hb_001318_030--Hb_009838_050 Hb_001318_030--Hb_000976_150 Hb_025557_010 Hb_025557_010 Hb_000976_150--Hb_025557_010 Hb_000976_150--Hb_000953_010 Hb_000976_150--Hb_156850_030 Hb_001584_160 Hb_001584_160 Hb_000976_150--Hb_001584_160 Hb_001817_180 Hb_001817_180 Hb_000976_150--Hb_001817_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.9725 44.7285 8.68715 8.38369 27.7907 30.693
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.8349 17.7304 32.3233 11.9454 4.40536

CAGE analysis