Hb_005396_080

Information

Type -
Description -
Location Contig5396: 78576-79723
Sequence    

Annotation

kegg
ID tcc:TCM_011890
description Nudix hydrolase 1
nr
ID XP_012082006.1
description PREDICTED: nudix hydrolase 1 [Jatropha curcas]
swissprot
ID Q9CA40
description Nudix hydrolase 1 OS=Arabidopsis thaliana GN=NUDT1 PE=1 SV=1
trembl
ID A0A067K2T5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18264 PE=4 SV=1
Gene Ontology
ID GO:0016787
description nudix hydrolase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47760: 78644-79757
cDNA
(Sanger)
(ID:Location)		 021_B15.ab1: 78675-79612 , 025_I07.ab1: 78648-79755

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005396_080 0.0 - - PREDICTED: nudix hydrolase 1 [Jatropha curcas]
2 Hb_002609_280 0.1211549495 - - villin 1-4, putative [Ricinus communis]
3 Hb_000599_090 0.1283538066 - - hypothetical protein POPTR_0002s039001g, partial [Populus trichocarpa]
4 Hb_096225_020 0.1399306706 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT22-like [Jatropha curcas]
5 Hb_002326_180 0.1407699462 - - Protein Z, putative [Ricinus communis]
6 Hb_003398_120 0.1417223059 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
7 Hb_000617_050 0.1449129394 - - PREDICTED: uncharacterized protein LOC105647466 [Jatropha curcas]
8 Hb_005694_080 0.1450087566 - - DNA-directed RNA polymerase III, putative [Ricinus communis]
9 Hb_000676_240 0.1455365436 - - thioredoxin H-type 2 [Hevea brasiliensis]
10 Hb_000106_090 0.1499917639 - - PREDICTED: uncharacterized protein LOC105634795 [Jatropha curcas]
11 Hb_001638_020 0.1550793936 - - PREDICTED: protein OSB1, mitochondrial isoform X1 [Jatropha curcas]
12 Hb_001143_080 0.1557244662 - - PREDICTED: F-box protein 7 [Jatropha curcas]
13 Hb_003216_100 0.1559958604 - - PREDICTED: uncharacterized protein LOC105641496 [Jatropha curcas]
14 Hb_001552_080 0.1566443137 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000264_090 0.1570512289 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
16 Hb_016604_020 0.1575541809 - - -
17 Hb_000352_140 0.1582860884 - - -
18 Hb_005841_050 0.1599029971 - - PREDICTED: F-box protein SKIP1-like [Jatropha curcas]
19 Hb_006594_020 0.1609712654 - - PREDICTED: uncharacterized protein LOC105138974 isoform X1 [Populus euphratica]
20 Hb_002375_090 0.1611345377 - - -

Gene co-expression network

sample Hb_005396_080 Hb_005396_080 Hb_002609_280 Hb_002609_280 Hb_005396_080--Hb_002609_280 Hb_000599_090 Hb_000599_090 Hb_005396_080--Hb_000599_090 Hb_096225_020 Hb_096225_020 Hb_005396_080--Hb_096225_020 Hb_002326_180 Hb_002326_180 Hb_005396_080--Hb_002326_180 Hb_003398_120 Hb_003398_120 Hb_005396_080--Hb_003398_120 Hb_000617_050 Hb_000617_050 Hb_005396_080--Hb_000617_050 Hb_000264_090 Hb_000264_090 Hb_002609_280--Hb_000264_090 Hb_000196_090 Hb_000196_090 Hb_002609_280--Hb_000196_090 Hb_007101_130 Hb_007101_130 Hb_002609_280--Hb_007101_130 Hb_007672_010 Hb_007672_010 Hb_002609_280--Hb_007672_010 Hb_000030_100 Hb_000030_100 Hb_002609_280--Hb_000030_100 Hb_002182_060 Hb_002182_060 Hb_002609_280--Hb_002182_060 Hb_009252_130 Hb_009252_130 Hb_000599_090--Hb_009252_130 Hb_000563_590 Hb_000563_590 Hb_000599_090--Hb_000563_590 Hb_001621_180 Hb_001621_180 Hb_000599_090--Hb_001621_180 Hb_000061_480 Hb_000061_480 Hb_000599_090--Hb_000061_480 Hb_000111_280 Hb_000111_280 Hb_000599_090--Hb_000111_280 Hb_000531_020 Hb_000531_020 Hb_000599_090--Hb_000531_020 Hb_002983_030 Hb_002983_030 Hb_096225_020--Hb_002983_030 Hb_000340_430 Hb_000340_430 Hb_096225_020--Hb_000340_430 Hb_005298_010 Hb_005298_010 Hb_096225_020--Hb_005298_010 Hb_004453_140 Hb_004453_140 Hb_096225_020--Hb_004453_140 Hb_005867_040 Hb_005867_040 Hb_096225_020--Hb_005867_040 Hb_002326_180--Hb_000617_050 Hb_000106_090 Hb_000106_090 Hb_002326_180--Hb_000106_090 Hb_001123_120 Hb_001123_120 Hb_002326_180--Hb_001123_120 Hb_000676_240 Hb_000676_240 Hb_002326_180--Hb_000676_240 Hb_002045_230 Hb_002045_230 Hb_002326_180--Hb_002045_230 Hb_002876_360 Hb_002876_360 Hb_002326_180--Hb_002876_360 Hb_002925_030 Hb_002925_030 Hb_003398_120--Hb_002925_030 Hb_001248_080 Hb_001248_080 Hb_003398_120--Hb_001248_080 Hb_000227_230 Hb_000227_230 Hb_003398_120--Hb_000227_230 Hb_001998_050 Hb_001998_050 Hb_003398_120--Hb_001998_050 Hb_148930_010 Hb_148930_010 Hb_003398_120--Hb_148930_010 Hb_011311_010 Hb_011311_010 Hb_003398_120--Hb_011311_010 Hb_000617_050--Hb_002876_360 Hb_003638_080 Hb_003638_080 Hb_000617_050--Hb_003638_080 Hb_003216_100 Hb_003216_100 Hb_000617_050--Hb_003216_100 Hb_000617_050--Hb_009252_130 Hb_004005_010 Hb_004005_010 Hb_000617_050--Hb_004005_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.4661 5.40465 0.845937 3.99046 18.6695 15.5504
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.841 64.0982 29.7143 13.982 1.39111

CAGE analysis