Hb_005396_110

Information

Type -
Description -
Location Contig5396: 109870-110178
Sequence    

Annotation

kegg
ID rcu:RCOM_0704470
description hypothetical protein
nr
ID XP_002524385.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8LAD7
description Protein IDA OS=Arabidopsis thaliana GN=IDA PE=2 SV=1
trembl
ID B9SEG6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0704470 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005396_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000509_040 0.0608927382 - - hypothetical protein VITISV_009716 [Vitis vinifera]
3 Hb_132517_010 0.0768183535 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like isoform X3 [Populus euphratica]
4 Hb_000111_150 0.0924334548 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
5 Hb_001059_050 0.0979978696 - - PREDICTED: putative F-box/LRR-repeat protein At3g18150 [Jatropha curcas]
6 Hb_001897_030 0.1069596463 - - PREDICTED: actin-depolymerizing factor 5 [Jatropha curcas]
7 Hb_087468_010 0.1141276608 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
8 Hb_151616_010 0.1159112911 - - -
9 Hb_005389_090 0.1173384849 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA27, putative [Ricinus communis]
10 Hb_004195_030 0.127813551 - - hypothetical protein POPTR_0006s17880g, partial [Populus trichocarpa]
11 Hb_005605_030 0.1307756259 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
12 Hb_002049_030 0.1385527187 - - PREDICTED: uncharacterized protein LOC105635940 isoform X3 [Jatropha curcas]
13 Hb_000991_110 0.1405726761 - - PREDICTED: uncharacterized protein LOC105636336 [Jatropha curcas]
14 Hb_000286_210 0.1424632074 - - hypothetical protein EUGRSUZ_C00018 [Eucalyptus grandis]
15 Hb_000028_360 0.1441698522 - - ubiquitin-protein ligase, putative [Ricinus communis]
16 Hb_024857_010 0.1507156706 - - glutaredoxin 2.1 [Hevea brasiliensis]
17 Hb_000252_190 0.1512808942 - - PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]
18 Hb_000000_280 0.1525971978 - - conserved hypothetical protein [Ricinus communis]
19 Hb_021443_020 0.155966726 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
20 Hb_007313_050 0.1568628379 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_005396_110 Hb_005396_110 Hb_000509_040 Hb_000509_040 Hb_005396_110--Hb_000509_040 Hb_132517_010 Hb_132517_010 Hb_005396_110--Hb_132517_010 Hb_000111_150 Hb_000111_150 Hb_005396_110--Hb_000111_150 Hb_001059_050 Hb_001059_050 Hb_005396_110--Hb_001059_050 Hb_001897_030 Hb_001897_030 Hb_005396_110--Hb_001897_030 Hb_087468_010 Hb_087468_010 Hb_005396_110--Hb_087468_010 Hb_005605_030 Hb_005605_030 Hb_000509_040--Hb_005605_030 Hb_000509_040--Hb_001897_030 Hb_000509_040--Hb_000111_150 Hb_002049_030 Hb_002049_030 Hb_000509_040--Hb_002049_030 Hb_000509_040--Hb_132517_010 Hb_005389_090 Hb_005389_090 Hb_132517_010--Hb_005389_090 Hb_132517_010--Hb_001059_050 Hb_132517_010--Hb_001897_030 Hb_151616_010 Hb_151616_010 Hb_132517_010--Hb_151616_010 Hb_001227_010 Hb_001227_010 Hb_132517_010--Hb_001227_010 Hb_000111_150--Hb_005605_030 Hb_000111_150--Hb_087468_010 Hb_000028_360 Hb_000028_360 Hb_000111_150--Hb_000028_360 Hb_000111_150--Hb_132517_010 Hb_000286_210 Hb_000286_210 Hb_001059_050--Hb_000286_210 Hb_001059_050--Hb_151616_010 Hb_021443_020 Hb_021443_020 Hb_001059_050--Hb_021443_020 Hb_001213_080 Hb_001213_080 Hb_001059_050--Hb_001213_080 Hb_007313_050 Hb_007313_050 Hb_001059_050--Hb_007313_050 Hb_001897_030--Hb_005389_090 Hb_000991_110 Hb_000991_110 Hb_001897_030--Hb_000991_110 Hb_001897_030--Hb_087468_010 Hb_024857_010 Hb_024857_010 Hb_087468_010--Hb_024857_010 Hb_000252_190 Hb_000252_190 Hb_087468_010--Hb_000252_190 Hb_087468_010--Hb_132517_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.02126 0.374228 1.87664 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.37931 0

CAGE analysis