Hb_005396_130

Information

Type -
Description -
Location Contig5396: 123381-131624
Sequence    

Annotation

kegg
ID rcu:RCOM_0704500
description ATP binding protein, putative
nr
ID XP_012082009.1
description PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
swissprot
ID Q9SAF6
description Protein CROWDED NUCLEI 2 OS=Arabidopsis thaliana GN=CRWN2 PE=1 SV=1
trembl
ID A0A067JZP5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18268 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47761: 123347-131222 , PASA_asmbl_47762: 128060-131434
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005396_130 0.0 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
2 Hb_000184_110 0.0702629997 - - hypothetical protein F383_18769 [Gossypium arboreum]
3 Hb_001322_190 0.0773220434 - - PREDICTED: uncharacterized protein LOC105632381 [Jatropha curcas]
4 Hb_001017_040 0.0776467416 - - PREDICTED: protein GLE1 isoform X2 [Populus euphratica]
5 Hb_004452_100 0.0887633898 - - PREDICTED: uncharacterized protein LOC105639563 [Jatropha curcas]
6 Hb_002798_040 0.0895360875 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
7 Hb_000100_070 0.0937820692 - - PREDICTED: pre-mRNA-splicing factor ISY1 homolog [Jatropha curcas]
8 Hb_000661_050 0.0958945193 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
9 Hb_001245_070 0.0971188085 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
10 Hb_001862_190 0.0980082982 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 isoform X2 [Jatropha curcas]
11 Hb_000093_080 0.0981270469 - - hypothetical protein POPTR_0008s09730g [Populus trichocarpa]
12 Hb_011318_010 0.1012674212 - - PREDICTED: peroxisome biogenesis protein 5 [Jatropha curcas]
13 Hb_002496_050 0.1021478653 - - PREDICTED: uncharacterized protein LOC105630509 [Jatropha curcas]
14 Hb_005662_030 0.1029953712 - - protein with unknown function [Ricinus communis]
15 Hb_000244_250 0.1058247607 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
16 Hb_000510_200 0.1072768866 - - nucleotide binding protein, putative [Ricinus communis]
17 Hb_000317_020 0.1082278311 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
18 Hb_012760_170 0.1084320239 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
19 Hb_001638_250 0.1089524426 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05600 [Jatropha curcas]
20 Hb_108216_040 0.109581585 - - PREDICTED: protein arginine N-methyltransferase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_005396_130 Hb_005396_130 Hb_000184_110 Hb_000184_110 Hb_005396_130--Hb_000184_110 Hb_001322_190 Hb_001322_190 Hb_005396_130--Hb_001322_190 Hb_001017_040 Hb_001017_040 Hb_005396_130--Hb_001017_040 Hb_004452_100 Hb_004452_100 Hb_005396_130--Hb_004452_100 Hb_002798_040 Hb_002798_040 Hb_005396_130--Hb_002798_040 Hb_000100_070 Hb_000100_070 Hb_005396_130--Hb_000100_070 Hb_000184_110--Hb_001017_040 Hb_000184_110--Hb_004452_100 Hb_000729_050 Hb_000729_050 Hb_000184_110--Hb_000729_050 Hb_005662_030 Hb_005662_030 Hb_000184_110--Hb_005662_030 Hb_108216_040 Hb_108216_040 Hb_000184_110--Hb_108216_040 Hb_001862_190 Hb_001862_190 Hb_001322_190--Hb_001862_190 Hb_000020_190 Hb_000020_190 Hb_001322_190--Hb_000020_190 Hb_001019_230 Hb_001019_230 Hb_001322_190--Hb_001019_230 Hb_000699_140 Hb_000699_140 Hb_001322_190--Hb_000699_140 Hb_006922_100 Hb_006922_100 Hb_001322_190--Hb_006922_100 Hb_000120_800 Hb_000120_800 Hb_001017_040--Hb_000120_800 Hb_001017_040--Hb_005662_030 Hb_000179_020 Hb_000179_020 Hb_001017_040--Hb_000179_020 Hb_002039_010 Hb_002039_010 Hb_001017_040--Hb_002039_010 Hb_004452_100--Hb_002798_040 Hb_001366_040 Hb_001366_040 Hb_004452_100--Hb_001366_040 Hb_011318_010 Hb_011318_010 Hb_004452_100--Hb_011318_010 Hb_000244_250 Hb_000244_250 Hb_004452_100--Hb_000244_250 Hb_004452_100--Hb_002039_010 Hb_002798_040--Hb_000100_070 Hb_002798_040--Hb_001366_040 Hb_002798_040--Hb_000244_250 Hb_002798_040--Hb_011318_010 Hb_010931_080 Hb_010931_080 Hb_002798_040--Hb_010931_080 Hb_000100_070--Hb_108216_040 Hb_007590_080 Hb_007590_080 Hb_000100_070--Hb_007590_080 Hb_002400_180 Hb_002400_180 Hb_000100_070--Hb_002400_180 Hb_000640_320 Hb_000640_320 Hb_000100_070--Hb_000640_320 Hb_002007_350 Hb_002007_350 Hb_000100_070--Hb_002007_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
63.8652 18.027 9.51505 9.97341 42.1962 51.7054
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.2261 24.2891 40.9012 19.403 32.1964

CAGE analysis