Hb_005398_030

Information

Type -
Description -
Location Contig5398: 16697-28045
Sequence    

Annotation

kegg
ID pop:POPTR_0014s17710g
description POPTRDRAFT_732647; beta-hydroxyisobutyryl-coa hydrolase 1 family protein
nr
ID XP_012078892.1
description PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1-like [Jatropha curcas]
swissprot
ID Q1PEY5
description Probable 3-hydroxyisobutyryl-CoA hydrolase 2 OS=Arabidopsis thaliana GN=At2g30650 PE=2 SV=1
trembl
ID A0A067KKY6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13404 PE=4 SV=1
Gene Ontology
ID GO:0004300
description 3-hydroxyisobutyryl- hydrolase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47764: 16534-28049 , PASA_asmbl_47765: 16536-28004
cDNA
(Sanger)
(ID:Location)		 049_B08.ab1: 25906-28049

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005398_030 0.0 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1-like [Jatropha curcas]
2 Hb_000087_020 0.057733736 - - PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Jatropha curcas]
3 Hb_000024_080 0.0685725047 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
4 Hb_117134_010 0.0732228599 - - PREDICTED: 14 kDa zinc-binding protein isoform X1 [Jatropha curcas]
5 Hb_011310_190 0.0773858933 - - PREDICTED: uncharacterized protein LOC105637641 isoform X1 [Jatropha curcas]
6 Hb_001235_070 0.0788047194 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000676_290 0.0789066343 - - PREDICTED: glutaredoxin-C3 [Jatropha curcas]
8 Hb_005997_010 0.080010527 - - Dihydroorotate dehydrogenase (quinone) [Morus notabilis]
9 Hb_003020_230 0.0803902076 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
10 Hb_001833_110 0.080968357 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004032_100 0.0829913545 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]
12 Hb_000103_090 0.0846487256 - - PREDICTED: protein RDM1 [Jatropha curcas]
13 Hb_000172_030 0.0848988691 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
14 Hb_148209_120 0.0855346274 - - hypothetical protein CISIN_1g032846mg [Citrus sinensis]
15 Hb_009954_040 0.0865537249 - - PREDICTED: putative golgin subfamily A member 6-like protein 6 [Jatropha curcas]
16 Hb_071130_030 0.0867714202 - - PREDICTED: dnaJ homolog subfamily C member 17 [Jatropha curcas]
17 Hb_032717_080 0.0874763756 - - gamma-soluble nsf attachment protein, putative [Ricinus communis]
18 Hb_005686_110 0.0890070208 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
19 Hb_000170_010 0.0890783018 - - o-methyltransferase, putative [Ricinus communis]
20 Hb_000041_050 0.090482165 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]

Gene co-expression network

sample Hb_005398_030 Hb_005398_030 Hb_000087_020 Hb_000087_020 Hb_005398_030--Hb_000087_020 Hb_000024_080 Hb_000024_080 Hb_005398_030--Hb_000024_080 Hb_117134_010 Hb_117134_010 Hb_005398_030--Hb_117134_010 Hb_011310_190 Hb_011310_190 Hb_005398_030--Hb_011310_190 Hb_001235_070 Hb_001235_070 Hb_005398_030--Hb_001235_070 Hb_000676_290 Hb_000676_290 Hb_005398_030--Hb_000676_290 Hb_000087_020--Hb_000024_080 Hb_000444_050 Hb_000444_050 Hb_000087_020--Hb_000444_050 Hb_004032_100 Hb_004032_100 Hb_000087_020--Hb_004032_100 Hb_005997_010 Hb_005997_010 Hb_000087_020--Hb_005997_010 Hb_000751_130 Hb_000751_130 Hb_000087_020--Hb_000751_130 Hb_000024_080--Hb_004032_100 Hb_010180_020 Hb_010180_020 Hb_000024_080--Hb_010180_020 Hb_000024_080--Hb_000676_290 Hb_004128_190 Hb_004128_190 Hb_000024_080--Hb_004128_190 Hb_000496_060 Hb_000496_060 Hb_117134_010--Hb_000496_060 Hb_000061_320 Hb_000061_320 Hb_117134_010--Hb_000061_320 Hb_001833_110 Hb_001833_110 Hb_117134_010--Hb_001833_110 Hb_005432_030 Hb_005432_030 Hb_117134_010--Hb_005432_030 Hb_071130_030 Hb_071130_030 Hb_117134_010--Hb_071130_030 Hb_007254_040 Hb_007254_040 Hb_011310_190--Hb_007254_040 Hb_032717_080 Hb_032717_080 Hb_011310_190--Hb_032717_080 Hb_007317_180 Hb_007317_180 Hb_011310_190--Hb_007317_180 Hb_001221_410 Hb_001221_410 Hb_011310_190--Hb_001221_410 Hb_000103_090 Hb_000103_090 Hb_011310_190--Hb_000103_090 Hb_005686_110 Hb_005686_110 Hb_001235_070--Hb_005686_110 Hb_001369_050 Hb_001369_050 Hb_001235_070--Hb_001369_050 Hb_000371_080 Hb_000371_080 Hb_001235_070--Hb_000371_080 Hb_148209_120 Hb_148209_120 Hb_001235_070--Hb_148209_120 Hb_004595_020 Hb_004595_020 Hb_001235_070--Hb_004595_020 Hb_000676_290--Hb_000087_020 Hb_000676_290--Hb_010180_020 Hb_000676_290--Hb_071130_030 Hb_002112_040 Hb_002112_040 Hb_000676_290--Hb_002112_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.6458 12.2511 8.40292 22.6533 26.7915 59.2693
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
74.088 55.6151 43.1753 24.2698 16.0928

CAGE analysis