Hb_005399_010

Information

Type -
Description -
Location Contig5399: 32760-34676
Sequence    

Annotation

kegg
ID rcu:RCOM_0401100
description hypothetical protein
nr
ID XP_012084519.1
description PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
swissprot
ID Q9SU29
description E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=1 SV=1
trembl
ID A0A067JU50
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20228 PE=4 SV=1
Gene Ontology
ID GO:0004842
description ubiquitin-protein ligase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47768: 32975-33454 , PASA_asmbl_47769: 33629-53093
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005399_010 0.0 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
2 Hb_000016_110 0.0784962736 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38010 [Jatropha curcas]
3 Hb_012016_020 0.0829785383 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105636265 [Jatropha curcas]
4 Hb_000497_140 0.0830844759 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
5 Hb_001871_040 0.0891031082 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 1-like isoform X2 [Jatropha curcas]
6 Hb_000106_040 0.0915161184 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera]
7 Hb_001431_070 0.095482892 - - PREDICTED: large proline-rich protein bag6-like isoform X2 [Jatropha curcas]
8 Hb_123777_030 0.0984907124 transcription factor TF Family: SNF2 PREDICTED: DNA helicase INO80 isoform X2 [Jatropha curcas]
9 Hb_004055_040 0.1004470495 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
10 Hb_000086_590 0.1013488969 - - PREDICTED: putative uncharacterized protein At4g01020, chloroplastic [Jatropha curcas]
11 Hb_000206_150 0.1018293783 - - unnamed protein product [Coffea canephora]
12 Hb_002341_030 0.1026118619 - - PREDICTED: transcription factor bHLH140 [Jatropha curcas]
13 Hb_001771_130 0.1032721385 - - PREDICTED: pentatricopeptide repeat-containing protein At2g27610 [Jatropha curcas]
14 Hb_000413_130 0.1034627079 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
15 Hb_000173_400 0.1053676452 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18950 [Jatropha curcas]
16 Hb_189118_010 0.1091083121 - - PREDICTED: extended synaptotagmin-1 [Cucumis melo]
17 Hb_110364_010 0.1093083118 - - gamma-tubulin complex component, putative [Ricinus communis]
18 Hb_000011_080 0.1110636779 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
19 Hb_000367_290 0.1120736782 - - PREDICTED: uncharacterized protein LOC105640583 [Jatropha curcas]
20 Hb_006091_030 0.1129970371 desease resistance Gene Name: AAA PREDICTED: cell division control protein 48 homolog C-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005399_010 Hb_005399_010 Hb_000016_110 Hb_000016_110 Hb_005399_010--Hb_000016_110 Hb_012016_020 Hb_012016_020 Hb_005399_010--Hb_012016_020 Hb_000497_140 Hb_000497_140 Hb_005399_010--Hb_000497_140 Hb_001871_040 Hb_001871_040 Hb_005399_010--Hb_001871_040 Hb_000106_040 Hb_000106_040 Hb_005399_010--Hb_000106_040 Hb_001431_070 Hb_001431_070 Hb_005399_010--Hb_001431_070 Hb_000016_110--Hb_000497_140 Hb_006091_030 Hb_006091_030 Hb_000016_110--Hb_006091_030 Hb_022288_010 Hb_022288_010 Hb_000016_110--Hb_022288_010 Hb_041091_010 Hb_041091_010 Hb_000016_110--Hb_041091_010 Hb_000016_110--Hb_012016_020 Hb_002341_030 Hb_002341_030 Hb_012016_020--Hb_002341_030 Hb_012016_020--Hb_001871_040 Hb_000453_080 Hb_000453_080 Hb_012016_020--Hb_000453_080 Hb_000906_060 Hb_000906_060 Hb_012016_020--Hb_000906_060 Hb_008528_010 Hb_008528_010 Hb_012016_020--Hb_008528_010 Hb_000497_140--Hb_006091_030 Hb_000497_140--Hb_000106_040 Hb_000077_130 Hb_000077_130 Hb_000497_140--Hb_000077_130 Hb_000086_590 Hb_000086_590 Hb_000497_140--Hb_000086_590 Hb_123777_030 Hb_123777_030 Hb_001871_040--Hb_123777_030 Hb_004055_040 Hb_004055_040 Hb_001871_040--Hb_004055_040 Hb_004096_020 Hb_004096_020 Hb_001871_040--Hb_004096_020 Hb_063047_010 Hb_063047_010 Hb_001871_040--Hb_063047_010 Hb_003406_040 Hb_003406_040 Hb_001871_040--Hb_003406_040 Hb_002928_060 Hb_002928_060 Hb_001871_040--Hb_002928_060 Hb_000206_150 Hb_000206_150 Hb_000106_040--Hb_000206_150 Hb_000106_040--Hb_000016_110 Hb_000367_290 Hb_000367_290 Hb_000106_040--Hb_000367_290 Hb_029866_130 Hb_029866_130 Hb_000106_040--Hb_029866_130 Hb_000413_130 Hb_000413_130 Hb_001431_070--Hb_000413_130 Hb_002725_070 Hb_002725_070 Hb_001431_070--Hb_002725_070 Hb_005295_040 Hb_005295_040 Hb_001431_070--Hb_005295_040 Hb_117950_020 Hb_117950_020 Hb_001431_070--Hb_117950_020 Hb_001439_180 Hb_001439_180 Hb_001431_070--Hb_001439_180 Hb_001431_070--Hb_000367_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.1973 37.413 4.26294 8.30963 65.1424 92.3189
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.1479 12.4156 54.2955 19.529 13.0829

CAGE analysis