Hb_005399_020

Information

Type -
Description -
Location Contig5399: 42585-53205
Sequence    

Annotation

kegg
ID mtr:MTR_2g025790
description E3 ubiquitin-protein ligase UPL5
nr
ID KDO78460.1
description hypothetical protein CISIN_1g022820mg [Citrus sinensis]
swissprot
ID B8N7E5
description Probable E3 ubiquitin-protein ligase hulA OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=hulA PE=3 SV=1
trembl
ID A0A067GIF8
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022820mg PE=4 SV=1
Gene Ontology
ID GO:0004842
description e3 ubiquitin-protein ligase upl5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47769: 33629-53093 , PASA_asmbl_47770: 41895-42283
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005399_020 0.0 - - hypothetical protein CISIN_1g022820mg [Citrus sinensis]
2 Hb_000116_280 0.0610692224 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
3 Hb_012395_160 0.064065869 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
4 Hb_005038_020 0.0798423014 - - WD-repeat protein, putative [Ricinus communis]
5 Hb_000685_080 0.0800313407 - - protein binding protein, putative [Ricinus communis]
6 Hb_000367_290 0.0844929829 - - PREDICTED: uncharacterized protein LOC105640583 [Jatropha curcas]
7 Hb_148209_020 0.0854536738 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
8 Hb_002977_010 0.0860849939 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
9 Hb_002133_030 0.089591972 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
10 Hb_089435_010 0.0896748373 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera]
11 Hb_004032_350 0.0906093881 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
12 Hb_000174_200 0.0909744436 - - PREDICTED: pre-mRNA-splicing factor 38 [Jatropha curcas]
13 Hb_000327_310 0.0912566918 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
14 Hb_000152_890 0.0929795417 - - hypothetical protein JCGZ_26265 [Jatropha curcas]
15 Hb_000735_120 0.0955938199 - - PREDICTED: pentatricopeptide repeat-containing protein At3g25210, mitochondrial [Jatropha curcas]
16 Hb_001584_170 0.0972658961 - - neutral/alkaline invertase [Manihot esculenta]
17 Hb_001975_020 0.100178868 - - PREDICTED: uncharacterized protein LOC105637186 [Jatropha curcas]
18 Hb_032202_240 0.1013403622 - - PREDICTED: F-box protein At4g00755 [Jatropha curcas]
19 Hb_002849_080 0.1024119957 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
20 Hb_004225_130 0.1031177205 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105628060 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005399_020 Hb_005399_020 Hb_000116_280 Hb_000116_280 Hb_005399_020--Hb_000116_280 Hb_012395_160 Hb_012395_160 Hb_005399_020--Hb_012395_160 Hb_005038_020 Hb_005038_020 Hb_005399_020--Hb_005038_020 Hb_000685_080 Hb_000685_080 Hb_005399_020--Hb_000685_080 Hb_000367_290 Hb_000367_290 Hb_005399_020--Hb_000367_290 Hb_148209_020 Hb_148209_020 Hb_005399_020--Hb_148209_020 Hb_003018_160 Hb_003018_160 Hb_000116_280--Hb_003018_160 Hb_000116_280--Hb_000367_290 Hb_001975_020 Hb_001975_020 Hb_000116_280--Hb_001975_020 Hb_006816_300 Hb_006816_300 Hb_000116_280--Hb_006816_300 Hb_002105_080 Hb_002105_080 Hb_000116_280--Hb_002105_080 Hb_012395_160--Hb_148209_020 Hb_001584_170 Hb_001584_170 Hb_012395_160--Hb_001584_170 Hb_012395_160--Hb_005038_020 Hb_006316_070 Hb_006316_070 Hb_012395_160--Hb_006316_070 Hb_012395_160--Hb_000116_280 Hb_002849_080 Hb_002849_080 Hb_005038_020--Hb_002849_080 Hb_005038_020--Hb_148209_020 Hb_002078_420 Hb_002078_420 Hb_005038_020--Hb_002078_420 Hb_000174_200 Hb_000174_200 Hb_005038_020--Hb_000174_200 Hb_003125_060 Hb_003125_060 Hb_000685_080--Hb_003125_060 Hb_009646_050 Hb_009646_050 Hb_000685_080--Hb_009646_050 Hb_000016_280 Hb_000016_280 Hb_000685_080--Hb_000016_280 Hb_002977_010 Hb_002977_010 Hb_000685_080--Hb_002977_010 Hb_002133_030 Hb_002133_030 Hb_000685_080--Hb_002133_030 Hb_000152_890 Hb_000152_890 Hb_000367_290--Hb_000152_890 Hb_005295_040 Hb_005295_040 Hb_000367_290--Hb_005295_040 Hb_004032_350 Hb_004032_350 Hb_000367_290--Hb_004032_350 Hb_000367_290--Hb_001975_020 Hb_000413_130 Hb_000413_130 Hb_000367_290--Hb_000413_130 Hb_148209_020--Hb_002849_080 Hb_148209_020--Hb_006316_070 Hb_002477_150 Hb_002477_150 Hb_148209_020--Hb_002477_150 Hb_148209_020--Hb_002977_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
83.3652 67.3411 14.2693 13.469 88.3012 96.0893
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.3342 18.8399 36.3084 14.8332 9.38623

CAGE analysis