Hb_005399_040

Information

Type -
Description -
Location Contig5399: 89753-94316
Sequence    

Annotation

kegg
ID rcu:RCOM_ORF00021
description rpoB; RNA polymerase beta subunit
nr
ID YP_004327649.1
description RNA polymerase beta subunit [Hevea brasiliensis]
swissprot
ID Q14FG5
description DNA-directed RNA polymerase subunit beta OS=Populus alba GN=rpoB PE=3 SV=1
trembl
ID F2X0A3
description DNA-directed RNA polymerase subunit beta OS=Hevea brasiliensis GN=rpoB PE=3 SV=1
Gene Ontology
ID GO:0009507
description rna polymerase beta subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005399_040 0.0 - - RNA polymerase beta subunit [Hevea brasiliensis]
2 Hb_000261_390 0.1134618318 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 15 [Jatropha curcas]
3 Hb_005399_050 0.1161673477 - - DNA-directed RNA polymerase subunit beta [Glycine soja]
4 Hb_185274_010 0.1180550114 - - hypothetical protein ARALYDRAFT_330174 [Arabidopsis lyrata subsp. lyrata]
5 Hb_003963_040 0.1198524555 - - ATP-dependent Clp protease proteolytic subunit [Hevea brasiliensis]
6 Hb_001135_170 0.1234158424 transcription factor TF Family: Orphans Two-component response regulator ARR2, putative [Ricinus communis]
7 Hb_001488_320 0.124062316 transcription factor TF Family: TCP Plastid transcription factor 1, putative isoform 1 [Theobroma cacao]
8 Hb_002006_050 0.1250686892 - - actin binding protein, putative [Ricinus communis]
9 Hb_000992_090 0.1345034491 transcription factor TF Family: Orphans CIL, putative [Ricinus communis]
10 Hb_011344_030 0.1367492839 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
11 Hb_103465_010 0.139052024 - - RNA polymerase beta subunit [Hevea brasiliensis]
12 Hb_003861_150 0.1422008993 - - hypothetical protein JCGZ_15167 [Jatropha curcas]
13 Hb_003053_080 0.1429441395 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000156_240 0.143295013 - - hypothetical protein MPER_07741 [Moniliophthora perniciosa FA553]
15 Hb_001832_180 0.1438127855 transcription factor TF Family: C2C2-GATA hypothetical protein RCOM_1046780 [Ricinus communis]
16 Hb_032631_060 0.1456765442 - - Myosin heavy chain, putative [Ricinus communis]
17 Hb_007044_020 0.1460428771 - - unnamed protein product [Vitis vinifera]
18 Hb_007595_050 0.1463920088 - - hypothetical chloroplast RF2 [Hevea brasiliensis]
19 Hb_023344_040 0.1474557776 - - conserved hypothetical protein [Ricinus communis]
20 Hb_087797_010 0.1476932348 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005399_040 Hb_005399_040 Hb_000261_390 Hb_000261_390 Hb_005399_040--Hb_000261_390 Hb_005399_050 Hb_005399_050 Hb_005399_040--Hb_005399_050 Hb_185274_010 Hb_185274_010 Hb_005399_040--Hb_185274_010 Hb_003963_040 Hb_003963_040 Hb_005399_040--Hb_003963_040 Hb_001135_170 Hb_001135_170 Hb_005399_040--Hb_001135_170 Hb_001488_320 Hb_001488_320 Hb_005399_040--Hb_001488_320 Hb_000261_390--Hb_001135_170 Hb_001832_180 Hb_001832_180 Hb_000261_390--Hb_001832_180 Hb_011344_030 Hb_011344_030 Hb_000261_390--Hb_011344_030 Hb_023344_040 Hb_023344_040 Hb_000261_390--Hb_023344_040 Hb_004631_020 Hb_004631_020 Hb_000261_390--Hb_004631_020 Hb_001287_070 Hb_001287_070 Hb_000261_390--Hb_001287_070 Hb_005399_050--Hb_185274_010 Hb_007504_040 Hb_007504_040 Hb_005399_050--Hb_007504_040 Hb_005399_050--Hb_003963_040 Hb_007595_050 Hb_007595_050 Hb_005399_050--Hb_007595_050 Hb_003861_150 Hb_003861_150 Hb_005399_050--Hb_003861_150 Hb_000992_090 Hb_000992_090 Hb_185274_010--Hb_000992_090 Hb_106552_030 Hb_106552_030 Hb_185274_010--Hb_106552_030 Hb_185274_010--Hb_000261_390 Hb_000029_390 Hb_000029_390 Hb_185274_010--Hb_000029_390 Hb_001338_150 Hb_001338_150 Hb_003963_040--Hb_001338_150 Hb_003032_090 Hb_003032_090 Hb_003963_040--Hb_003032_090 Hb_001338_160 Hb_001338_160 Hb_003963_040--Hb_001338_160 Hb_000156_240 Hb_000156_240 Hb_003963_040--Hb_000156_240 Hb_001135_170--Hb_004631_020 Hb_001135_170--Hb_000992_090 Hb_001135_170--Hb_011344_030 Hb_001135_170--Hb_001832_180 Hb_001135_170--Hb_023344_040 Hb_002006_050 Hb_002006_050 Hb_001488_320--Hb_002006_050 Hb_001488_320--Hb_000261_390 Hb_003847_070 Hb_003847_070 Hb_001488_320--Hb_003847_070 Hb_020648_030 Hb_020648_030 Hb_001488_320--Hb_020648_030 Hb_000825_010 Hb_000825_010 Hb_001488_320--Hb_000825_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.338354 0.18461 4.72897 0.816691 0.245514 0.29002
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0360141 0.0682708 0.0286595 15.8632

CAGE analysis