Hb_005399_050

Information

Type -
Description -
Location Contig5399: 94391-95370
Sequence    

Annotation

kegg
ID mtr:MTR_4g034840
description DNA-directed RNA polymerase subunit beta
nr
ID KHN23995.1
description DNA-directed RNA polymerase subunit beta [Glycine soja]
swissprot
ID P05472
description Probable DNA-directed RNA polymerase OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) PE=3 SV=1
trembl
ID M1BHU1
description DNA-directed RNA polymerase OS=Solanum tuberosum GN=PGSC0003DMG401017663 PE=3 SV=1
Gene Ontology
ID GO:0016740
description rna polymerase beta subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47775: 94624-95099
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005399_050 0.0 - - DNA-directed RNA polymerase subunit beta [Glycine soja]
2 Hb_185274_010 0.1104388798 - - hypothetical protein ARALYDRAFT_330174 [Arabidopsis lyrata subsp. lyrata]
3 Hb_007504_040 0.1159718381 - - hypothetical chloroplast RF2 [Fragaria iinumae]
4 Hb_005399_040 0.1161673477 - - RNA polymerase beta subunit [Hevea brasiliensis]
5 Hb_003963_040 0.1289835627 - - ATP-dependent Clp protease proteolytic subunit [Hevea brasiliensis]
6 Hb_007595_050 0.1462252247 - - hypothetical chloroplast RF2 [Hevea brasiliensis]
7 Hb_003861_150 0.1561061951 - - hypothetical protein JCGZ_15167 [Jatropha curcas]
8 Hb_000261_390 0.1610893764 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 15 [Jatropha curcas]
9 Hb_001338_160 0.1671886611 - - NADH dehydrogenase subunit 5 [Hevea brasiliensis]
10 Hb_162094_010 0.1683227626 - - RNA polymerase alpha subunit [Hevea brasiliensis]
11 Hb_001488_320 0.1747280146 transcription factor TF Family: TCP Plastid transcription factor 1, putative isoform 1 [Theobroma cacao]
12 Hb_106552_030 0.1753645054 - - hypothetical protein POPTR_0006s23180g [Populus trichocarpa]
13 Hb_185274_020 0.1759469951 - - Ycf2 (chloroplast) [Andrographis paniculata]
14 Hb_006901_020 0.1761480708 - - PREDICTED: guard cell S-type anion channel SLAC1 [Jatropha curcas]
15 Hb_087797_010 0.1762089925 - - kinase, putative [Ricinus communis]
16 Hb_001135_170 0.1771783035 transcription factor TF Family: Orphans Two-component response regulator ARR2, putative [Ricinus communis]
17 Hb_002835_090 0.179323059 - - RecName: Full=Elongation factor Tu, chloroplastic; Short=EF-Tu; Flags: Precursor [Glycine max]
18 Hb_007237_100 0.1797880405 - - DNA-directed RNA polymerase beta chain, putative [Ricinus communis]
19 Hb_000039_210 0.1805203005 - - PREDICTED: uncharacterized protein LOC105649449 [Jatropha curcas]
20 Hb_003693_060 0.1808052557 - - NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]

Gene co-expression network

sample Hb_005399_050 Hb_005399_050 Hb_185274_010 Hb_185274_010 Hb_005399_050--Hb_185274_010 Hb_007504_040 Hb_007504_040 Hb_005399_050--Hb_007504_040 Hb_005399_040 Hb_005399_040 Hb_005399_050--Hb_005399_040 Hb_003963_040 Hb_003963_040 Hb_005399_050--Hb_003963_040 Hb_007595_050 Hb_007595_050 Hb_005399_050--Hb_007595_050 Hb_003861_150 Hb_003861_150 Hb_005399_050--Hb_003861_150 Hb_185274_010--Hb_005399_040 Hb_000992_090 Hb_000992_090 Hb_185274_010--Hb_000992_090 Hb_106552_030 Hb_106552_030 Hb_185274_010--Hb_106552_030 Hb_000261_390 Hb_000261_390 Hb_185274_010--Hb_000261_390 Hb_000029_390 Hb_000029_390 Hb_185274_010--Hb_000029_390 Hb_185274_030 Hb_185274_030 Hb_007504_040--Hb_185274_030 Hb_001338_160 Hb_001338_160 Hb_007504_040--Hb_001338_160 Hb_007504_040--Hb_005399_040 Hb_107647_010 Hb_107647_010 Hb_007504_040--Hb_107647_010 Hb_001155_020 Hb_001155_020 Hb_007504_040--Hb_001155_020 Hb_005399_040--Hb_000261_390 Hb_005399_040--Hb_003963_040 Hb_001135_170 Hb_001135_170 Hb_005399_040--Hb_001135_170 Hb_001488_320 Hb_001488_320 Hb_005399_040--Hb_001488_320 Hb_001338_150 Hb_001338_150 Hb_003963_040--Hb_001338_150 Hb_003032_090 Hb_003032_090 Hb_003963_040--Hb_003032_090 Hb_003963_040--Hb_001338_160 Hb_000156_240 Hb_000156_240 Hb_003963_040--Hb_000156_240 Hb_007595_050--Hb_003861_150 Hb_002835_090 Hb_002835_090 Hb_007595_050--Hb_002835_090 Hb_007595_020 Hb_007595_020 Hb_007595_050--Hb_007595_020 Hb_005228_060 Hb_005228_060 Hb_007595_050--Hb_005228_060 Hb_011900_020 Hb_011900_020 Hb_007595_050--Hb_011900_020 Hb_156850_020 Hb_156850_020 Hb_007595_050--Hb_156850_020 Hb_003861_150--Hb_005399_040 Hb_001584_210 Hb_001584_210 Hb_003861_150--Hb_001584_210 Hb_000161_010 Hb_000161_010 Hb_003861_150--Hb_000161_010 Hb_003861_150--Hb_005228_060 Hb_003861_150--Hb_002835_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.431008 0.403768 3.49646 0.595328 0.09718 0.694155
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0745793 11.1687

CAGE analysis