Hb_005410_010

Information

Type transcription factor
Description TF Family: HSF
Location Contig5410: 9161-11261
Sequence    

Annotation

kegg
ID pop:POPTR_0006s24330g
description POPTRDRAFT_763234; hypothetical protein
nr
ID KDP34084.1
description hypothetical protein JCGZ_07655 [Jatropha curcas]
swissprot
ID P41152
description Heat shock factor protein HSF30 OS=Solanum peruvianum GN=HSF30 PE=2 SV=1
trembl
ID A0A067KQI1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07655 PE=3 SV=1
Gene Ontology
ID GO:0005634
description heat shock factor protein hsf30 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47868: 9133-11179 , PASA_asmbl_47869: 9377-9781
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005410_010 0.0 transcription factor TF Family: HSF hypothetical protein JCGZ_07655 [Jatropha curcas]
2 Hb_012654_020 0.0726646353 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002172_030 0.0838371375 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105639104 isoform X1 [Jatropha curcas]
4 Hb_154381_050 0.08642429 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002149_040 0.0947938659 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001846_080 0.1038769108 - - PREDICTED: poly(rC)-binding protein 3-like [Nicotiana sylvestris]
7 Hb_000161_030 0.1048041513 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
8 Hb_002078_040 0.1079680586 - - protein with unknown function [Ricinus communis]
9 Hb_002405_020 0.1080989163 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
10 Hb_001016_060 0.1092014976 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001628_110 0.1095125989 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
12 Hb_000320_440 0.1101310951 - - PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]
13 Hb_050964_020 0.1112856514 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC1-like [Populus euphratica]
14 Hb_006173_020 0.1115807338 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
15 Hb_007111_040 0.1136852236 - - PREDICTED: uncharacterized protein LOC105628142 isoform X1 [Jatropha curcas]
16 Hb_000088_180 0.1152543698 - - hypothetical protein JCGZ_11198 [Jatropha curcas]
17 Hb_000050_120 0.1161164734 - - PREDICTED: uncharacterized protein LOC105630790 [Jatropha curcas]
18 Hb_006029_010 0.1165540216 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
19 Hb_000260_700 0.1165637062 - - PREDICTED: cytochrome P450 89A2-like [Jatropha curcas]
20 Hb_001776_080 0.1167235354 - - PREDICTED: CAX-interacting protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_005410_010 Hb_005410_010 Hb_012654_020 Hb_012654_020 Hb_005410_010--Hb_012654_020 Hb_002172_030 Hb_002172_030 Hb_005410_010--Hb_002172_030 Hb_154381_050 Hb_154381_050 Hb_005410_010--Hb_154381_050 Hb_002149_040 Hb_002149_040 Hb_005410_010--Hb_002149_040 Hb_001846_080 Hb_001846_080 Hb_005410_010--Hb_001846_080 Hb_000161_030 Hb_000161_030 Hb_005410_010--Hb_000161_030 Hb_012654_020--Hb_002172_030 Hb_011609_190 Hb_011609_190 Hb_012654_020--Hb_011609_190 Hb_002078_040 Hb_002078_040 Hb_012654_020--Hb_002078_040 Hb_001776_080 Hb_001776_080 Hb_012654_020--Hb_001776_080 Hb_000050_120 Hb_000050_120 Hb_012654_020--Hb_000050_120 Hb_002172_030--Hb_001846_080 Hb_002172_030--Hb_000050_120 Hb_002172_030--Hb_011609_190 Hb_002172_030--Hb_154381_050 Hb_004156_060 Hb_004156_060 Hb_154381_050--Hb_004156_060 Hb_001115_050 Hb_001115_050 Hb_154381_050--Hb_001115_050 Hb_006029_010 Hb_006029_010 Hb_154381_050--Hb_006029_010 Hb_154381_050--Hb_012654_020 Hb_005016_030 Hb_005016_030 Hb_002149_040--Hb_005016_030 Hb_002405_020 Hb_002405_020 Hb_002149_040--Hb_002405_020 Hb_002149_040--Hb_001776_080 Hb_001016_060 Hb_001016_060 Hb_002149_040--Hb_001016_060 Hb_000926_270 Hb_000926_270 Hb_002149_040--Hb_000926_270 Hb_006173_020 Hb_006173_020 Hb_002149_040--Hb_006173_020 Hb_000172_530 Hb_000172_530 Hb_001846_080--Hb_000172_530 Hb_000483_370 Hb_000483_370 Hb_001846_080--Hb_000483_370 Hb_006478_070 Hb_006478_070 Hb_001846_080--Hb_006478_070 Hb_001846_080--Hb_012654_020 Hb_000320_440 Hb_000320_440 Hb_001846_080--Hb_000320_440 Hb_000161_030--Hb_006029_010 Hb_002818_040 Hb_002818_040 Hb_000161_030--Hb_002818_040 Hb_000078_130 Hb_000078_130 Hb_000161_030--Hb_000078_130 Hb_000491_080 Hb_000491_080 Hb_000161_030--Hb_000491_080 Hb_000413_130 Hb_000413_130 Hb_000161_030--Hb_000413_130 Hb_002377_050 Hb_002377_050 Hb_000161_030--Hb_002377_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
213.533 51.6247 7.45828 15.5891 367.381 275.324
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
101.26 98.1679 99.7683 19.0226 10.3007

CAGE analysis