Hb_005410_030

Information

Type -
Description -
Location Contig5410: 23367-23813
Sequence    

Annotation

kegg
ID cic:CICLE_v10009836mg
description hypothetical protein
nr
ID AEC03329.1
description glutaredoxin 2 [Hevea brasiliensis]
swissprot
ID Q8L9S3
description Glutaredoxin-C6 OS=Arabidopsis thaliana GN=GRXC6 PE=2 SV=2
trembl
ID I1SSK0
description Glutaredoxin 2 OS=Hevea brasiliensis GN=Grx2 PE=2 SV=1
Gene Ontology
ID GO:0009055
description glutaredoxin-c6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47870: 23290-24062
cDNA
(Sanger)
(ID:Location)		 015_A01.ab1: 23290-24007 , 015_M23.ab1: 23290-24009 , 016_N05.ab1: 23290-23993

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005410_030 0.0 - - glutaredoxin 2 [Hevea brasiliensis]
2 Hb_001109_120 0.1203996037 - - PREDICTED: acyl-CoA-binding protein-like [Nelumbo nucifera]
3 Hb_000861_050 0.1281088857 - - PREDICTED: transcription elongation factor SPT6-like isoform X1 [Populus euphratica]
4 Hb_000005_030 0.1388251688 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
5 Hb_000580_160 0.1440412114 - - Nitrate transporter 1.5 [Morus notabilis]
6 Hb_012799_060 0.1468436585 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
7 Hb_012779_110 0.1497781442 - - PREDICTED: uncharacterized protein LOC105650717 [Jatropha curcas]
8 Hb_002235_220 0.1498349385 - - PREDICTED: pectinesterase 31-like [Jatropha curcas]
9 Hb_000580_170 0.1501231753 - - PREDICTED: arginase 1, mitochondrial [Jatropha curcas]
10 Hb_029584_140 0.1506754692 - - senescence-associated family protein [Populus trichocarpa]
11 Hb_028365_010 0.1548871209 - - PREDICTED: uncharacterized protein LOC105631661 [Jatropha curcas]
12 Hb_003023_050 0.1574162625 - - hypothetical protein POPTR_0013s10320g [Populus trichocarpa]
13 Hb_000526_020 0.1579594714 - - thioredoxin-like family protein [Hevea brasiliensis]
14 Hb_000143_050 0.1613716368 - - PREDICTED: MFP1 attachment factor 1-like [Jatropha curcas]
15 Hb_000062_580 0.1621502881 - - ATP binding protein, putative [Ricinus communis]
16 Hb_000052_010 0.1623241952 - - hypothetical protein M569_08416, partial [Genlisea aurea]
17 Hb_030765_020 0.1646976064 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_007120_070 0.1652768958 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
19 Hb_003756_010 0.1668808071 - - PREDICTED: uncharacterized protein LOC105642108 [Jatropha curcas]
20 Hb_000284_010 0.1684790934 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_04974 [Jatropha curcas]

Gene co-expression network

sample Hb_005410_030 Hb_005410_030 Hb_001109_120 Hb_001109_120 Hb_005410_030--Hb_001109_120 Hb_000861_050 Hb_000861_050 Hb_005410_030--Hb_000861_050 Hb_000005_030 Hb_000005_030 Hb_005410_030--Hb_000005_030 Hb_000580_160 Hb_000580_160 Hb_005410_030--Hb_000580_160 Hb_012799_060 Hb_012799_060 Hb_005410_030--Hb_012799_060 Hb_012779_110 Hb_012779_110 Hb_005410_030--Hb_012779_110 Hb_000580_170 Hb_000580_170 Hb_001109_120--Hb_000580_170 Hb_002221_080 Hb_002221_080 Hb_001109_120--Hb_002221_080 Hb_001109_120--Hb_012799_060 Hb_004724_140 Hb_004724_140 Hb_001109_120--Hb_004724_140 Hb_001722_040 Hb_001722_040 Hb_001109_120--Hb_001722_040 Hb_000052_010 Hb_000052_010 Hb_000861_050--Hb_000052_010 Hb_003023_050 Hb_003023_050 Hb_000861_050--Hb_003023_050 Hb_004055_060 Hb_004055_060 Hb_000861_050--Hb_004055_060 Hb_000714_010 Hb_000714_010 Hb_000861_050--Hb_000714_010 Hb_000861_050--Hb_000005_030 Hb_000526_020 Hb_000526_020 Hb_000005_030--Hb_000526_020 Hb_006816_440 Hb_006816_440 Hb_000005_030--Hb_006816_440 Hb_003038_180 Hb_003038_180 Hb_000005_030--Hb_003038_180 Hb_000062_580 Hb_000062_580 Hb_000005_030--Hb_000062_580 Hb_149683_010 Hb_149683_010 Hb_000005_030--Hb_149683_010 Hb_000184_180 Hb_000184_180 Hb_000005_030--Hb_000184_180 Hb_005276_100 Hb_005276_100 Hb_000580_160--Hb_005276_100 Hb_000580_160--Hb_003023_050 Hb_006469_060 Hb_006469_060 Hb_000580_160--Hb_006469_060 Hb_000580_160--Hb_012779_110 Hb_000580_160--Hb_004055_060 Hb_002235_220 Hb_002235_220 Hb_000580_160--Hb_002235_220 Hb_012799_060--Hb_000580_170 Hb_000078_030 Hb_000078_030 Hb_012799_060--Hb_000078_030 Hb_001741_080 Hb_001741_080 Hb_012799_060--Hb_001741_080 Hb_030765_020 Hb_030765_020 Hb_012799_060--Hb_030765_020 Hb_005016_130 Hb_005016_130 Hb_012799_060--Hb_005016_130 Hb_003540_230 Hb_003540_230 Hb_012799_060--Hb_003540_230 Hb_012779_110--Hb_002221_080 Hb_000025_290 Hb_000025_290 Hb_012779_110--Hb_000025_290 Hb_012779_110--Hb_003023_050 Hb_012779_110--Hb_006469_060 Hb_012779_110--Hb_005276_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
981.525 57.0069 21.8507 27.1694 238.101 264.363
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1081.39 982.723 279.134 21.3722 6.95911

CAGE analysis