Hb_005428_010

Information

Type -
Description -
Location Contig5428: 48200-51629
Sequence    

Annotation

kegg
ID rcu:RCOM_0497080
description cytochrome P450, putative (EC:1.14.13.76)
nr
ID XP_002527850.1
description cytochrome P450, putative [Ricinus communis]
swissprot
ID Q7XU38
description Cytochrome P450 87A3 OS=Oryza sativa subsp. japonica GN=CYP87A3 PE=2 SV=3
trembl
ID B9SPD1
description Cytochrome P450, putative OS=Ricinus communis GN=RCOM_0497080 PE=3 SV=1
Gene Ontology
ID GO:0004497
description cytochrome p450 87a3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005428_010 0.0 - - cytochrome P450, putative [Ricinus communis]
2 Hb_003073_060 0.0281784092 - - -
3 Hb_000352_020 0.0484385542 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]
4 Hb_009838_030 0.0635278078 - - Tetratricopeptide repeat-like superfamily protein [Theobroma cacao]
5 Hb_001948_100 0.0815430625 - - conserved hypothetical protein [Ricinus communis]
6 Hb_011671_360 0.0822381435 - - Hyoscyamine 6-dioxygenase, putative [Ricinus communis]
7 Hb_000072_010 0.0838188095 - - hypothetical protein B456_006G246700 [Gossypium raimondii]
8 Hb_002014_120 0.0916094028 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP8 [Populus euphratica]
9 Hb_039440_010 0.092901747 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000152_090 0.0950990763 - - unnamed protein product [Coffea canephora]
11 Hb_179367_010 0.1017567594 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
12 Hb_004652_040 0.101862173 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
13 Hb_001518_050 0.1027286054 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
14 Hb_185437_010 0.1070529784 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
15 Hb_104855_010 0.1088476727 - - -
16 Hb_007125_020 0.1099298193 - - hypothetical protein POPTR_0003s18010g [Populus trichocarpa]
17 Hb_104362_020 0.1113050399 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
18 Hb_003337_010 0.1115435228 - - conserved hypothetical protein [Ricinus communis]
19 Hb_182625_010 0.1117648198 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
20 Hb_103000_010 0.1147282695 - - hypothetical protein POPTR_0007s02210g [Populus trichocarpa]

Gene co-expression network

sample Hb_005428_010 Hb_005428_010 Hb_003073_060 Hb_003073_060 Hb_005428_010--Hb_003073_060 Hb_000352_020 Hb_000352_020 Hb_005428_010--Hb_000352_020 Hb_009838_030 Hb_009838_030 Hb_005428_010--Hb_009838_030 Hb_001948_100 Hb_001948_100 Hb_005428_010--Hb_001948_100 Hb_011671_360 Hb_011671_360 Hb_005428_010--Hb_011671_360 Hb_000072_010 Hb_000072_010 Hb_005428_010--Hb_000072_010 Hb_003073_060--Hb_000352_020 Hb_003073_060--Hb_009838_030 Hb_003073_060--Hb_001948_100 Hb_003073_060--Hb_011671_360 Hb_000152_090 Hb_000152_090 Hb_003073_060--Hb_000152_090 Hb_000352_020--Hb_009838_030 Hb_002014_120 Hb_002014_120 Hb_000352_020--Hb_002014_120 Hb_179367_010 Hb_179367_010 Hb_000352_020--Hb_179367_010 Hb_000352_020--Hb_001948_100 Hb_009838_030--Hb_002014_120 Hb_009838_030--Hb_001948_100 Hb_004652_040 Hb_004652_040 Hb_009838_030--Hb_004652_040 Hb_009838_030--Hb_179367_010 Hb_003337_010 Hb_003337_010 Hb_009838_030--Hb_003337_010 Hb_001948_100--Hb_000152_090 Hb_001948_100--Hb_003337_010 Hb_001948_100--Hb_002014_120 Hb_001948_100--Hb_004652_040 Hb_103000_010 Hb_103000_010 Hb_001948_100--Hb_103000_010 Hb_182625_010 Hb_182625_010 Hb_011671_360--Hb_182625_010 Hb_104855_010 Hb_104855_010 Hb_011671_360--Hb_104855_010 Hb_011671_360--Hb_000072_010 Hb_005773_010 Hb_005773_010 Hb_011671_360--Hb_005773_010 Hb_000072_010--Hb_005773_010 Hb_000072_010--Hb_104855_010 Hb_039440_010 Hb_039440_010 Hb_000072_010--Hb_039440_010 Hb_160950_010 Hb_160950_010 Hb_000072_010--Hb_160950_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0273546 0.0250368 0.0793358 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis