Hb_005432_010

Information

Type -
Description -
Location Contig5432: 30616-31299
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47882: 30566-58221
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005432_010 0.0 - - -
2 Hb_002774_070 0.0874347702 - - hypothetical protein EUGRSUZ_F00307 [Eucalyptus grandis]
3 Hb_000204_040 0.0907647683 - - PREDICTED: polyadenylate-binding protein-interacting protein 6 [Jatropha curcas]
4 Hb_004944_010 0.0941296443 - - small nuclear ribonucleoprotein E [Hevea brasiliensis]
5 Hb_000349_060 0.1032748656 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
6 Hb_000165_030 0.1033776402 - - PREDICTED: uncharacterized protein LOC105645673 isoform X1 [Jatropha curcas]
7 Hb_109842_010 0.1080524405 - - PREDICTED: uncharacterized protein LOC105647554 isoform X2 [Jatropha curcas]
8 Hb_023001_050 0.1087400158 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
9 Hb_000156_140 0.1119031713 - - Ribosomal protein L18ae/LX family protein [Theobroma cacao]
10 Hb_009411_020 0.1120518637 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
11 Hb_000690_080 0.1136168451 transcription factor TF Family: HB -
12 Hb_000749_150 0.1141577195 - - -
13 Hb_000364_010 0.1155400892 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
14 Hb_004204_200 0.1160450847 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
15 Hb_000625_020 0.1165877872 - - conserved hypothetical protein [Ricinus communis]
16 Hb_141131_010 0.1168220092 - - Diphthamide biosynthesis protein, putative [Ricinus communis]
17 Hb_002529_060 0.1171911397 - - PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282107 [Jatropha curcas]
18 Hb_003502_080 0.1180239702 - - vacuolar protein sorting, putative [Ricinus communis]
19 Hb_002253_040 0.1195614502 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]
20 Hb_004447_030 0.1211855986 - - PREDICTED: glucose-induced degradation protein 4 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_005432_010 Hb_005432_010 Hb_002774_070 Hb_002774_070 Hb_005432_010--Hb_002774_070 Hb_000204_040 Hb_000204_040 Hb_005432_010--Hb_000204_040 Hb_004944_010 Hb_004944_010 Hb_005432_010--Hb_004944_010 Hb_000349_060 Hb_000349_060 Hb_005432_010--Hb_000349_060 Hb_000165_030 Hb_000165_030 Hb_005432_010--Hb_000165_030 Hb_109842_010 Hb_109842_010 Hb_005432_010--Hb_109842_010 Hb_009411_020 Hb_009411_020 Hb_002774_070--Hb_009411_020 Hb_000156_140 Hb_000156_140 Hb_002774_070--Hb_000156_140 Hb_033312_140 Hb_033312_140 Hb_002774_070--Hb_033312_140 Hb_002475_050 Hb_002475_050 Hb_002774_070--Hb_002475_050 Hb_000749_150 Hb_000749_150 Hb_002774_070--Hb_000749_150 Hb_000120_500 Hb_000120_500 Hb_000204_040--Hb_000120_500 Hb_000943_070 Hb_000943_070 Hb_000204_040--Hb_000943_070 Hb_141131_010 Hb_141131_010 Hb_000204_040--Hb_141131_010 Hb_000204_040--Hb_000749_150 Hb_000364_010 Hb_000364_010 Hb_000204_040--Hb_000364_010 Hb_003502_080 Hb_003502_080 Hb_000204_040--Hb_003502_080 Hb_004944_010--Hb_000349_060 Hb_000690_080 Hb_000690_080 Hb_004944_010--Hb_000690_080 Hb_004944_010--Hb_141131_010 Hb_000457_110 Hb_000457_110 Hb_004944_010--Hb_000457_110 Hb_003874_020 Hb_003874_020 Hb_004944_010--Hb_003874_020 Hb_003038_030 Hb_003038_030 Hb_004944_010--Hb_003038_030 Hb_000780_060 Hb_000780_060 Hb_000349_060--Hb_000780_060 Hb_105386_010 Hb_105386_010 Hb_000349_060--Hb_105386_010 Hb_023001_050 Hb_023001_050 Hb_000349_060--Hb_023001_050 Hb_001358_030 Hb_001358_030 Hb_000349_060--Hb_001358_030 Hb_000465_430 Hb_000465_430 Hb_000349_060--Hb_000465_430 Hb_000162_090 Hb_000162_090 Hb_000165_030--Hb_000162_090 Hb_000165_030--Hb_000749_150 Hb_002997_170 Hb_002997_170 Hb_000165_030--Hb_002997_170 Hb_000905_190 Hb_000905_190 Hb_000165_030--Hb_000905_190 Hb_000165_030--Hb_000156_140 Hb_000165_030--Hb_109842_010 Hb_005306_110 Hb_005306_110 Hb_109842_010--Hb_005306_110 Hb_109842_010--Hb_009411_020 Hb_001504_150 Hb_001504_150 Hb_109842_010--Hb_001504_150 Hb_000625_020 Hb_000625_020 Hb_109842_010--Hb_000625_020 Hb_168707_030 Hb_168707_030 Hb_109842_010--Hb_168707_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.2812 13.7481 15.4001 25.7401 36.1955 65.1258
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.1326 32.0971 22.4359 3.7437 6.77057

CAGE analysis